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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 7
  • golgi 5
  • plasma membrane 5
  • endoplasmic reticulum 5
  • vacuole 5
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
 nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH09784 Soybean nucleus 97.59 97.59
KRH16010 Soybean nucleus 68.18 69.67
KRH05109 Soybean nucleus 68.18 69.67
PGSC0003DMT400073388 Potato mitochondrion 68.45 69.0
GSMUA_Achr1P14570_001 Banana extracellular 67.38 68.48
Solyc06g067910.2.1 Tomato nucleus 67.38 67.74
GSMUA_Achr2P08300_001 Banana extracellular 66.31 67.21
VIT_09s0002g05930.t01 Wine grape endoplasmic reticulum, extracellular 72.73 67.16
KRH44408 Soybean golgi 77.81 66.59
PGSC0003DMT400073682 Potato cytosol 59.36 66.27
PGSC0003DMT400014547 Potato extracellular 64.97 66.03
KRH52488 Soybean extracellular 64.17 65.75
GSMUA_Achr7P08400_001 Banana endoplasmic reticulum, extracellular, vacuole 64.44 65.67
KRH52489 Soybean extracellular, golgi 64.17 64.86
Solyc03g120040.2.1 Tomato extracellular, nucleus 44.65 64.73
GSMUA_Achr2P17020_001 Banana endoplasmic reticulum, vacuole 63.37 64.58
Solyc12g042930.1.1 Tomato endoplasmic reticulum, golgi 65.51 64.47
KXG29757 Sorghum golgi 59.89 60.22
HORVU6Hr1G037000.1 Barley extracellular 60.16 60.16
TraesCS6B01G207200.1 Wheat extracellular 59.89 59.89
TraesCS6A01G177500.1 Wheat extracellular 59.63 59.63
TraesCS7D01G442500.1 Wheat golgi 58.82 59.46
Os01t0611000-01 Rice extracellular 59.09 59.25
TraesCS7B01G353600.2 Wheat extracellular 58.56 59.19
TraesCS7A01G453100.1 Wheat golgi 58.29 58.92
OQU87155 Sorghum golgi 58.82 58.67
Os02t0205200-01 Rice mitochondrion, nucleus, plastid 56.15 57.53
TraesCS6D01G166800.1 Wheat extracellular, golgi, vacuole 52.14 57.35
Zm00001d044455_P001 Maize plasma membrane 58.29 57.22
Os04t0494950-01 Rice extracellular, vacuole 54.81 55.11
Os04t0494900-01 Rice extracellular 55.08 54.64
EES11052 Sorghum mitochondrion 54.81 54.09
Os04t0494600-01 Rice extracellular 53.74 53.32
Zm00001d003186_P001 Maize extracellular 54.01 53.3
TraesCS2B01G369800.1 Wheat extracellular 53.21 53.07
TraesCS2D01G349800.1 Wheat mitochondrion 53.21 52.79
TraesCS2B01G455800.1 Wheat golgi 52.41 52.55
TraesCS2A01G351600.1 Wheat endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole 52.94 52.52
HORVU2Hr1G085440.1 Barley extracellular 52.94 52.38
Zm00001d003183_P001 Maize extracellular, mitochondrion, plasma membrane, plastid 53.21 52.37
TraesCS2A01G434700.1 Wheat golgi 52.14 52.28
TraesCS2B01G369500.1 Wheat cytosol 50.0 52.23
TraesCS2D01G432500.1 Wheat extracellular, golgi 51.87 52.01
Os02t0527500-00 Rice plastid 18.18 51.91
EES11054 Sorghum extracellular, vacuole 52.41 51.85
OQU81862 Sorghum cytosol, endoplasmic reticulum, golgi, mitochondrion 54.28 51.79
TraesCS2A01G351700.1 Wheat extracellular 50.27 51.51
Os04t0495000-00 Rice extracellular, golgi, vacuole 51.34 51.47
KXG26630 Sorghum extracellular 52.14 51.32
TraesCS5B01G390400.1 Wheat plastid 41.98 51.14
Zm00001d003184_P001 Maize endoplasmic reticulum, extracellular, mitochondrion, peroxisome 48.93 50.97
TraesCS2B01G369900.1 Wheat extracellular 49.73 50.96
TraesCS2D01G349700.1 Wheat endoplasmic reticulum, golgi, mitochondrion 51.6 50.92
TraesCS2D01G349900.1 Wheat extracellular 49.47 50.68
TraesCS5A01G385400.1 Wheat extracellular 51.07 50.66
TraesCS2B01G369700.1 Wheat endoplasmic reticulum, golgi 51.34 50.66
TraesCS2A01G351400.1 Wheat extracellular 50.8 50.4
TraesCS2D01G349500.1 Wheat extracellular 50.8 50.4
TraesCS5D01G395400.1 Wheat extracellular 50.8 50.26
EES11053 Sorghum endoplasmic reticulum, extracellular, vacuole 50.53 50.13
TraesCS2A01G351500.1 Wheat extracellular, golgi 50.8 50.13
HORVU2Hr1G085430.1 Barley endoplasmic reticulum, golgi 50.53 50.0
HORVU5Hr1G094750.2 Barley extracellular 50.53 48.96
TraesCS2B01G369300.1 Wheat endoplasmic reticulum, extracellular, vacuole 49.2 48.55
TraesCS2A01G351200.1 Wheat endoplasmic reticulum, extracellular, vacuole 49.2 48.55
TraesCS2D01G349200.1 Wheat endoplasmic reticulum, extracellular, vacuole 48.93 48.28
KRH32968 Soybean endoplasmic reticulum 47.33 48.23
TraesCS2B01G440300.1 Wheat extracellular 49.2 47.92
KRH13974 Soybean nucleus 46.52 47.41
TraesCS2A01G421300.1 Wheat extracellular 48.4 47.01
Zm00001d003187_P002 Maize endoplasmic reticulum, plasma membrane 48.66 45.84
HORVU2Hr1G085370.2 Barley endoplasmic reticulum 45.99 45.26
KXG26629 Sorghum golgi 50.0 45.17
Zm00001d025754_P001 Maize golgi 49.2 45.1
KRH23881 Soybean extracellular 42.51 45.04
KRH39918 Soybean endoplasmic reticulum, extracellular, golgi 46.52 44.62
KRH11195 Soybean endoplasmic reticulum 43.05 40.97
KRH21062 Soybean endoplasmic reticulum 43.05 40.97
HORVU2Hr1G085340.2 Barley mitochondrion, plastid 51.07 38.2
Zm00001d015715_P001 Maize plasma membrane 58.56 37.37
HORVU2Hr1G085520.2 Barley extracellular 31.02 31.78
Os03t0328501-00 Rice plastid 24.87 29.9
Zm00001d003185_P001 Maize extracellular 53.21 28.76
Os04t0494800-01 Rice extracellular 19.25 19.0
Os07t0132600-00 Rice mitochondrion, nucleus, plastid 16.04 16.44
Protein Annotations
EMBL:ACUP02008474EnsemblPlants:KRH23537EnsemblPlantsGene:GLYMA_13G362800Gene3D:2.60.120.260InterPro:DUF642InterPro:Galactose-bd-like_sf
InterPro:IPR008979PANTHER:PTHR31265PANTHER:PTHR31265:SF9PFAM:PF04862ProteinID:KRH23537ProteinID:KRH23537.1
SignalP:SignalP-noTMSUPFAM:SSF49785UniParc:UPI000233B6AFUniProt:I1M5Q9MapMan:35.2:
Description
hypothetical protein
Coordinates
chr13:+:44986023..44989336
Molecular Weight (calculated)
40881.1 Da
IEP (calculated)
8.116
GRAVY (calculated)
-0.148
Length
374 amino acids
Sequence
(BLAST)
001: MQRLKLQLVL FLSISTCHTV FSFTDGLLPN GNFEQGPKPS QLKGSVVTGH DAIPNWTISG FVEYIKSGQK QGDMLLVVPE GDYAVRLGNE ASIKQKLKLI
101: KGSFYSITFS AARTCAQEEK LNVSVVPTTE KRDWGIIPIQ TMYGSNGWES FTCGFRADFP EAEIVIHNPG KEEDPACGPL IDSVALKVLY PPKRTRANLL
201: KNGNLEEGPY IFPNSSWGAL IPPHIEDSHG PLPGWIVESL KAVKYIDSDH FAVPEGKRAI ELVAGKESAL AQVVITTIGK TYDLTFAVGD ANNECEASMM
301: VEAFAGANTV QVPYQSKGKG GFVRGKLRFK AVSTRTRLRF LSTFYTMKSD NSGSLCGPVI DDVKLLGVRY PTHA
Best Arabidopsis Sequence Match ( AT1G80240.1 )
(BLAST)
001: MMYQEAALLL ALLFISSNVV LSAPVRDGLL PNGNFELGPK PSQMKGSVVK ERTAVPNWNI IGFVEFIKSG QKQDDMVLVV PQGSSAVRLG NEASISQKIS
101: VLPGRLYSIT FSAARTCAQD ERLNISVTHE SGVIPIQTMY GSDGWDSYSW AFKAGGPEIE IRFHNPGVEE HPACGPLIDA VAIKALFPPR FSGYNLIKNG
201: NFEEGPYVFP TAKWGVLIPP FIEDDNSPLP GWMIESLKAV KYVDKAHFAV PEGHRAIELV GGKESAISQI VRTSLNKFYA LTFNVGDARD GCEGPMIVEA
301: FAGQGKVMVD YASKGKGGFR RGRLVFKAVS ARTRVTFLST FYHMKSDHSG SLCGPVIDDV RLVAVGKLRG
Arabidopsis Description
At1g80240 [Source:UniProtKB/TrEMBL;Acc:Q9SSB7]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.