CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32968	Soybean	endoplasmic reticulum	96.73	96.73
KRH23881	Soybean	extracellular	74.66	77.62
KRH39918	Soybean	endoplasmic reticulum, extracellular, golgi	79.84	75.13
VIT_13s0064g00460.t01	Wine grape	extracellular	73.3	74.72
PGSC0003DMT400017671	Potato	extracellular	74.39	74.39
Solyc01g087540.2.1	Tomato	extracellular	73.57	73.57
CDY28002	Canola	extracellular	66.21	66.58
AT3G08030.1	Thale cress	extracellular	66.21	66.58
Bra029693.1-P	Field mustard	extracellular	65.94	66.3
CDY35979	Canola	extracellular	65.94	66.3
CDY22149	Canola	extracellular	65.94	66.3
Bra040046.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	65.67	66.03
GSMUA_Achr9P25300_001	Banana	extracellular, vacuole	61.85	62.53
EER93244	Sorghum	extracellular, vacuole	61.58	58.55
Os03t0807700-01	Rice	plastid	61.31	57.25
TraesCS5D01G469800.1	Wheat	extracellular, vacuole	59.67	55.16
Zm00001d034547_P002	Maize	extracellular, vacuole	62.13	55.07
HORVU5Hr1G109880.2	Barley	golgi, vacuole	59.67	52.52
KRH16010	Soybean	nucleus	51.5	51.64
KRH05109	Soybean	nucleus	51.5	51.64
TraesCS5A01G458700.1	Wheat	extracellular, golgi	59.95	50.93
GSMUA_Achr6P29630_001	Banana	cytosol, plastid	42.78	49.68
KRH52488	Soybean	extracellular	47.96	48.22
KRH09784	Soybean	nucleus	47.96	47.06
KRH23537	Soybean	nucleus	47.41	46.52
KRH52489	Soybean	extracellular, golgi	46.87	46.49
Os07t0206900-01	Rice	cytosol, peroxisome	11.17	41.84
KRH44408	Soybean	golgi	48.77	40.96
KRH11195	Soybean	endoplasmic reticulum	40.33	37.66
KRH21062	Soybean	endoplasmic reticulum	39.78	37.15

Protein Annotations

EMBL:ACUP02009806	EMBL:BT093866	EnsemblPlants:KRH13974	EnsemblPlantsGene:GLYMA_15G276100	EntrezGene:100796094	InterPro:DUF642
PANTHER:PTHR31265	PANTHER:PTHR31265:SF2	PFAM:PF04862	ProteinID:KRH13974	ProteinID:KRH13974.1	SEG:seg
SignalP:SignalP-noTM	UniParc:UPI0001B162E1	UniProt:C6T8R3	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr15:-:51510448..51513137

Molecular Weight (calculated)

39852.1 Da

IEP (calculated)

9.040

GRAVY (calculated)

0.024

Length

367 amino acids

Sequence
(BLAST)

001: MAVTLTSTLF MALLFAASAF AALQPRVPEA YLQNGNFEEQ PNPKNLQKTK LMGKYSLPKW EVNGLVEYVS GGPQPGGMFF PVTHGIHAVR LGNEASISQN
101: IKVKPGQLYA LILGASRTCA QDEVLRISVP AQTGDVPLQT LYSLNGDVIA WGFKATSSVV KVTFHNPGVQ EDPSCGPLLD AIAIREFYPP MPTRVNLVKN
201: PGFEEGPFPI FNSTNGVLLP PQQQDGFSPL PGWIIESLKA VKFIDSKHFN VPFGLGAVEL VAGRESAIAQ IIRTVTNKVY NITFSVGDAK NGCHGSMMVE
301: AFAAKDTFKV PFKSEGKGTS KTVSFKFKAI APRTRLTFYS SFYHTRIDDY GSLCGPVIDQ VIVFPVA

Best Arabidopsis Sequence Match ( AT3G08030.1 )
(BLAST)

001: MAVPKAIILP ILLLICGAAL GAPASEGYLR NGNFEESPKK TDMKKTVLLG KNALPEWETT GFVEYIAGGP QPGGMYFPVA HGVHAVRLGN EATISQKLEV
101: KPGSLYALTF GASRTCAQDE VLRVSVPSQS GDLPLQTLYN SFGGDVYAWA FVAKTSQVTV TFHNPGVQED PACGPLLDAV AIKELVHPIY TRGNLVKNGG
201: FEEGPHRLVN STQGVLLPPK QEDLTSPLPG WIIESLKAVK FIDSKYFNVP FGHAAIELVA GKESAIAQVI RTSPGQTYTL SFVVGDAKND CHGSMMVEAF
301: AARDTLKVPH TSVGGGHVKT ASFKFKAVEA RTRITFFSGF YHTKKTDTVS LCGPVIDEIV VSHVA

Arabidopsis Description

F17A17.37 protein [Source:UniProtKB/TrEMBL;Acc:Q9SFB1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.