Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G074990.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G29980.1 | HORVU2Hr1G074990.1 | AT2G23420.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G294100.1 | Wheat | plasma membrane | 78.85 | 90.86 |
| TraesCS3B01G328900.1 | Wheat | plasma membrane | 78.41 | 90.36 |
| TraesCS3A01G294300.1 | Wheat | extracellular, golgi, plasma membrane | 77.97 | 89.62 |
| Os01t0531400-00 | Rice | cytosol | 53.96 | 88.77 |
| Os01t0756600-01 | Rice | plasma membrane | 73.35 | 83.46 |
| EES01494 | Sorghum | plasma membrane | 70.26 | 80.15 |
| Zm00001d043414_P001 | Maize | plasma membrane | 69.82 | 79.85 |
| Zm00001d012718_P004 | Maize | endoplasmic reticulum, plasma membrane | 69.16 | 74.94 |
| GSMUA_Achr4P15090_001 | Banana | cytosol, endoplasmic reticulum, peroxisome | 55.73 | 66.75 |
| Solyc02g070540.2.1 | Tomato | endoplasmic reticulum, vacuole | 54.63 | 63.43 |
| VIT_10s0003g03250.t01 | Wine grape | extracellular, golgi, plasma membrane | 54.63 | 63.27 |
| PGSC0003DMT400054520 | Potato | endoplasmic reticulum, vacuole | 54.19 | 62.92 |
| KRH11195 | Soybean | endoplasmic reticulum | 54.19 | 62.6 |
| KRH21062 | Soybean | endoplasmic reticulum | 53.74 | 62.09 |
| AT1G29980.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 53.52 | 59.71 |
| CDY26302 | Canola | extracellular, golgi, plasma membrane | 53.74 | 59.66 |
| Bra032349.1-P | Field mustard | extracellular, golgi, plasma membrane | 53.74 | 59.66 |
| GSMUA_Achr3P31400_001 | Banana | plasma membrane | 58.37 | 59.15 |
| CDY17255 | Canola | plasma membrane | 51.98 | 59.0 |
| CDX84311 | Canola | plasma membrane | 51.98 | 59.0 |
| Bra005419.1-P | Field mustard | plasma membrane | 51.76 | 58.75 |
| AT2G34510.1 | Thale cress | vacuole | 51.54 | 58.35 |
| CDX99870 | Canola | plasma membrane | 49.56 | 57.69 |
| HORVU6Hr1G037000.1 | Barley | extracellular | 35.9 | 43.58 |
| HORVU2Hr1G085430.1 | Barley | endoplasmic reticulum, golgi | 32.16 | 38.62 |
| HORVU2Hr1G085440.1 | Barley | extracellular | 31.5 | 37.83 |
| HORVU5Hr1G094750.2 | Barley | extracellular | 31.5 | 37.05 |
| HORVU2Hr1G085370.2 | Barley | endoplasmic reticulum | 29.96 | 35.79 |
| HORVU5Hr1G109880.2 | Barley | golgi, vacuole | 32.82 | 35.73 |
| HORVU2Hr1G085340.2 | Barley | mitochondrion, plastid | 31.06 | 28.2 |
| HORVU2Hr1G085520.2 | Barley | extracellular | 19.82 | 24.66 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G072860.3 | EnsemblPlantsGene:HORVU3Hr1G072860 | Gene3D:2.60.120.260 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF642 | InterPro:Galactose-bd-like_sf | InterPro:IPR008979 | PANTHER:PTHR31265 | PANTHER:PTHR31265:SF1 | PFAM:PF04862 |
| SEG:seg | SUPFAM:SSF49785 | TMHMM:TMhelix | UniParc:UPI000B465122 | UniProt:A0A287LM28 | MapMan:35.2 |
Description
No Description!
Coordinates
chrchr3H:-:549471106..549474951
Molecular Weight (calculated)
49277.6 Da
IEP (calculated)
6.599
GRAVY (calculated)
-0.156
Length
454 amino acids
Sequence
(BLAST)
(BLAST)
001: VAWLHPAPLP PSSRQPHLPL TSLPLPPPHS STHRGRKGRV VVTGEGAGEP RGRAARRRRR WSEGSHCWGW GWRCFCWRPL AAWPRPLRWR TGLLINGDFE
101: TAPPGGFVKS SSVSEGAAIP SWTINGTVEL ISAGQHQGGM ILIVPQGDHA VRLGNDAGIG QVVQVEKGSE YAITFSAART CAQLESLNIS AGSISQTVDL
201: QTLYSIEGWD AYALAFQAVD EQANIEFRNP GMEDDPTCGP ILDNVAIKKL FSPDKAKENM VINGDFEEGP WMFPNTSFGV LLPTNLDEQT SALPGWMIES
301: NRAVRFIDSE QYTVPQGKRA IELLSGKEGI ISQMVETTPQ KAYILTFTLG SAGDSCQPPM AVMAFAGDQA QNFHYSPMGN ATSQAVNVNF TARAERSRVA
401: LYSVYYNTRS DDHSSLCGPV IDDVRVWGLN GAAGLKASIG MLIAMVSVIV LVLF
101: TAPPGGFVKS SSVSEGAAIP SWTINGTVEL ISAGQHQGGM ILIVPQGDHA VRLGNDAGIG QVVQVEKGSE YAITFSAART CAQLESLNIS AGSISQTVDL
201: QTLYSIEGWD AYALAFQAVD EQANIEFRNP GMEDDPTCGP ILDNVAIKKL FSPDKAKENM VINGDFEEGP WMFPNTSFGV LLPTNLDEQT SALPGWMIES
301: NRAVRFIDSE QYTVPQGKRA IELLSGKEGI ISQMVETTPQ KAYILTFTLG SAGDSCQPPM AVMAFAGDQA QNFHYSPMGN ATSQAVNVNF TARAERSRVA
401: LYSVYYNTRS DDHSSLCGPV IDDVRVWGLN GAAGLKASIG MLIAMVSVIV LVLF
001: MTGLVINGDF ETSPSSGFPD DGVTDGPSDI PSWKSNGTVE LINSGQKQGG MILIVPQGRH AVRLGNDAEI SQDLTVEKGF VYSVTFSAAR TCAQLESINV
101: SVASVNADAD DMLASRNVDL QTLYSVQGWD PYAWAFEAED DHVRLVFKNP GMEDDPTCGP IIDDIAIKKL FTPDKPKDNA VINGDFEDGP WMFRNTSLGV
201: LLPTNLDEEI SSLPGWTVES NRAVRFVDSD HFSVPKGKRA VELLSGKEGI ISQMVETKAD KPYILSFSLG HAGDKCKEPL AIMAFAGDQA QNFHYMAQAN
301: SSFEKAGLNF TAKADRTRVA FYSVYYNTRT DDMSSLCGPV IDDVRVWFSG SKRIGAGFGF WVFVLLVVGL V
101: SVASVNADAD DMLASRNVDL QTLYSVQGWD PYAWAFEAED DHVRLVFKNP GMEDDPTCGP IIDDIAIKKL FTPDKPKDNA VINGDFEDGP WMFRNTSLGV
201: LLPTNLDEEI SSLPGWTVES NRAVRFVDSD HFSVPKGKRA VELLSGKEGI ISQMVETKAD KPYILSFSLG HAGDKCKEPL AIMAFAGDQA QNFHYMAQAN
301: SSFEKAGLNF TAKADRTRVA FYSVYYNTRT DDMSSLCGPV IDDVRVWFSG SKRIGAGFGF WVFVLLVVGL V
Arabidopsis Description
Uncharacterized protein T1P2.9 [Source:UniProtKB/TrEMBL;Acc:Q9C8S1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.