Factsheet for Zm00001d043414_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003674_P001
Zm00001d003675_P001
Zm00001d025412_P001
Zm00001d034777_P005

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29980.1	Zm00001d003674_P001	AT2G23420.1	21798944
AT1G29980.1	Zm00001d003675_P001	AT2G23420.1	21798944
AT1G29980.1	Zm00001d025412_P001	AT2G23420.1	21798944
AT1G29980.1	Zm00001d034777_P005	AT2G23420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01494	Sorghum	plasma membrane	97.48	97.24
Os01t0531400-00	Rice	cytosol	63.48	91.3
Os01t0756600-01	Rice	plasma membrane	91.18	90.73
TraesCS3D01G294100.1	Wheat	plasma membrane	84.38	85.03
TraesCS3B01G328900.1	Wheat	plasma membrane	84.38	85.03
Zm00001d012718_P004	Maize	endoplasmic reticulum, plasma membrane	89.42	84.73
TraesCS3A01G294300.1	Wheat	extracellular, golgi, plasma membrane	83.38	83.8
HORVU3Hr1G072860.3	Barley	plastid	79.85	69.82
GSMUA_Achr4P15090_001	Banana	cytosol, endoplasmic reticulum, peroxisome	65.74	68.87
KRH11195	Soybean	endoplasmic reticulum	64.48	65.14
KRH21062	Soybean	endoplasmic reticulum	63.48	64.12
VIT_10s0003g03250.t01	Wine grape	extracellular, golgi, plasma membrane	63.22	64.03
PGSC0003DMT400054520	Potato	endoplasmic reticulum, vacuole	62.97	63.94
Solyc02g070540.2.1	Tomato	endoplasmic reticulum, vacuole	62.47	63.43
GSMUA_Achr3P31400_001	Banana	plasma membrane	70.03	62.05
CDY26302	Canola	extracellular, golgi, plasma membrane	62.72	60.88
CDX84311	Canola	plasma membrane	61.21	60.75
Bra032349.1-P	Field mustard	extracellular, golgi, plasma membrane	62.47	60.64
CDY17255	Canola	plasma membrane	60.96	60.5
AT1G29980.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	61.96	60.44
Bra005419.1-P	Field mustard	plasma membrane	60.71	60.25
AT2G34510.1	Thale cress	vacuole	60.45	59.85
CDX99870	Canola	plasma membrane	57.93	58.97
Zm00001d044455_P001	Maize	plasma membrane	41.81	43.57
Zm00001d003186_P001	Maize	extracellular	40.3	42.22
Zm00001d003183_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	40.3	42.11
Zm00001d003184_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, peroxisome	37.78	41.78
Zm00001d034547_P002	Maize	extracellular, vacuole	40.81	39.13
Zm00001d003187_P002	Maize	endoplasmic reticulum, plasma membrane	37.53	37.53
Zm00001d025754_P001	Maize	golgi	36.52	35.54
Zm00001d015715_P001	Maize	plasma membrane	42.07	28.5
Zm00001d003185_P001	Maize	extracellular	40.05	22.98

Protein Annotations

Gene3D:2.60.120.260	MapMan:35.2	UniProt:B4FVN8	EMBL:BT041176	EMBL:BT042975	InterPro:DUF642
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:Galactose-bd-like_sf	InterPro:IPR008979	ProteinID:ONM37786.1
ProteinID:ONM37787.1	PFAM:PF04862	PANTHER:PTHR31265	PANTHER:PTHR31265:SF1	SUPFAM:SSF49785	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI00017B7756	EnsemblPlantsGene:Zm00001d043414	EnsemblPlants:Zm00001d043414_P001	EnsemblPlants:Zm00001d043414_T001	SEG:seg

Description

No Description!

Coordinates

chr3:-:199050966..199054942

Molecular Weight (calculated)

42172.0 Da

IEP (calculated)

4.336

GRAVY (calculated)

0.035

Length

397 amino acids

Sequence
(BLAST)

001: MEADSARKRL ALLALLLLAA PVRPASAAPV EDGLLSNGDF ETAPSGGFVK SASVAEGASS IPGWTINGTV ELISAGQHQG GMILIVPQGD HAVRLGNDAS
101: VGQVVDVEKG SEYAITFSAA RTCAQLEALN VSVLGGVSQT VDLQTLYNIE GWDAYALAFQ ATEEQAHLQF MNPGMEDDPT CGPILDNVAV KKLFTPDKPK
201: DNVVLNGDFE EGPWMFPNTS FGVLLPTNLD EQTSAIPGWM IESNRAVRYI DSDEYKVPQG KRAIELLSGK EGIISQMVET TPQKVYSLTF TLGTAGDSCQ
301: PPMAVMAFAG DQAQNFHYSP MGNATSQAAN VTFTARAERT RVAFYSVYYN TRSDDHSSLC GPVIDDVRVW ALNAAAGLKA SIGLVLGIVG VVGMVLF

Best Arabidopsis Sequence Match ( AT1G29980.1 )
(BLAST)

001: MVPSNNRCKW SSIFLFLLSV SVAVLVAVAD DKSPAVEDGL VINGDFETSP SSGFPDDGVT DGPSDIPSWK SNGTVELINS GQKQGGMILI VPQGRHAVRL
101: GNDAEISQDL TVEKGFVYSV TFSAARTCAQ LESINVSVAS VNADADDMLA SRNVDLQTLY SVQGWDPYAW AFEAEDDHVR LVFKNPGMED DPTCGPIIDD
201: IAIKKLFTPD KPKDNAVING DFEDGPWMFR NTSLGVLLPT NLDEEISSLP GWTVESNRAV RFVDSDHFSV PKGKRAVELL SGKEGIISQM VETKADKPYI
301: LSFSLGHAGD KCKEPLAIMA FAGDQAQNFH YMAQANSSFE KAGLNFTAKA DRTRVAFYSV YYNTRTDDMS SLCGPVIDDV RVWFSGSKRI GAGFGFWVFV
401: LLVVGLV

Arabidopsis Description

Uncharacterized protein T1P2.9 [Source:UniProtKB/TrEMBL;Acc:Q9C8S1]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.