Factsheet for Bra003558.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57694	Canola	extracellular	99.46	99.19
Bra035192.1-P	Field mustard	extracellular	83.2	90.03
AT1G80240.1	Thale cress	endoplasmic reticulum	89.7	89.46
Bra023324.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	60.7	65.88
Bra020500.1-P	Field mustard	extracellular	60.16	60.66
Bra009841.1-P	Field mustard	extracellular	60.16	60.49
Bra011349.1-P	Field mustard	golgi	59.35	60.0
Bra040046.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	50.41	50.96
Bra029693.1-P	Field mustard	extracellular	50.14	50.68
Bra004650.1-P	Field mustard	extracellular	49.05	48.79
Bra004651.1-P	Field mustard	extracellular	48.51	48.38
Bra016917.1-P	Field mustard	extracellular	48.24	47.59
Bra005419.1-P	Field mustard	plasma membrane	43.9	40.5
Bra032349.1-P	Field mustard	extracellular, golgi, plasma membrane	43.9	39.61
Bra006241.1-P	Field mustard	extracellular, plasma membrane	28.73	27.53

Protein Annotations

EnsemblPlants:Bra003558.1	EnsemblPlants:Bra003558.1-P	EnsemblPlantsGene:Bra003558	Gene3D:2.60.120.260	InterPro:DUF642	InterPro:Galactose-bd-like_sf
InterPro:IPR008979	PANTHER:PTHR31265	PANTHER:PTHR31265:SF9	PFAM:PF04862	SEG:seg	SignalP:SignalP-noTM
SUPFAM:SSF49785	UniParc:UPI00025419DD	UniProt:M4CH75	MapMan:35.2	:	:

Description

AT1G80240 (E=9e-187) | unknown protein

Coordinates

chrA07:-:13774284..13775668

Molecular Weight (calculated)

40087.1 Da

IEP (calculated)

8.871

GRAVY (calculated)

-0.086

Length

369 amino acids

Sequence
(BLAST)

001: MYQEAALLLA LLCVSSNVAV SAPIRDGLLP NGNFEIGPKP SQLKGSVVKE RNAVAHWDMT GFVEYIKAGQ KQDDMVLVVP EGSSAVRLGN EASISQKISV
101: RSGRLYSITF SAARTCAQDE RLNISVTHES GVIPIQTMYG SDGWDSYSWA FKAGGPEIVI RIHNPGREEQ PACGPLIDAV AIKALFPPRF SGYNLIKNGN
201: FEEGPYVFST AKWGVLIPPF IEDDNSPLPG WIIESLKAVK YVDKAHFFVP EGHRAIELVG GKESAVSQIV RTSPNKFYAL TFNVGDARDG CEGPMAVEAF
301: AGRGKTLVEY VSKGKGGFKR GRLVFKAVSA RTRVTFLSTF YHMKNDHSGS LCGPVVDDVR LVAVKTLRG

Best Arabidopsis Sequence Match ( AT1G80240.1 )
(BLAST)

001: MMYQEAALLL ALLFISSNVV LSAPVRDGLL PNGNFELGPK PSQMKGSVVK ERTAVPNWNI IGFVEFIKSG QKQDDMVLVV PQGSSAVRLG NEASISQKIS
101: VLPGRLYSIT FSAARTCAQD ERLNISVTHE SGVIPIQTMY GSDGWDSYSW AFKAGGPEIE IRFHNPGVEE HPACGPLIDA VAIKALFPPR FSGYNLIKNG
201: NFEEGPYVFP TAKWGVLIPP FIEDDNSPLP GWMIESLKAV KYVDKAHFAV PEGHRAIELV GGKESAISQI VRTSLNKFYA LTFNVGDARD GCEGPMIVEA
301: FAGQGKVMVD YASKGKGGFR RGRLVFKAVS ARTRVTFLST FYHMKSDHSG SLCGPVIDDV RLVAVGKLRG

Arabidopsis Description

At1g80240 [Source:UniProtKB/TrEMBL;Acc:Q9SSB7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.