Factsheet for Os04t0563700-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

mitochondrion: 15069638

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0803200-01
Os02t0282900-01
Os02t0521300-01
Os02t0611400-01
Os03t0132200-01
Os03t0146300-01
Os03t0710800-01
Os03t0740700-01
Os04t0382100-01
Os04t0398000-02
Os04t0443300-00
Os04t0485000-01
Os04t0661900-01
Os05t0494200-02
Os06t0725300-01
Os07t0475400-01
Os08t0512600-01
Os09t0553100-00
Os10t0539500-01
Os10t0542400-01
Os11t0160500-01
Os11t0546000-01
Os11t0546900-01
Os12t0162500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20590.1	Os02t0282900-01	AT4G19210.1	20706207
AT1G20590.1	Os11t0546000-01	AT4G19210.1	20706207
AT1G20610.1	Os02t0611400-01	AT1G19520.1	20706207
AT1G20610.1	Os11t0160500-01	AT1G43700.1	20706207
AT1G20610.1	Os12t0162500-01	AT1G43700.1	20706207
AT1G20610.1	Os03t0740700-01	AT1G56290.1	20706207
AT1G20610.1	Os04t0443300-00	AT1G71380.1	20706207
AT1G20610.1	Os03t0146300-01	AT2G27960.1	20706207
AT1G20610.1	Os04t0661900-01	AT3G11270.1	20706207
AT1G20610.1	Os02t0521300-01	AT5G07300.1	20706207
AT1G20610.1	Os04t0398000-02	AT5G13330.1	20706207
AT1G20610.1	Os04t0382100-01	AT5G14170.1	20706207
AT2G17620.1	Os08t0512600-01	AT1G76540.1	12857813
AT4G35620.1	Os10t0539500-01	AT1G07660.1	20706207
AT4G35620.1	Os04t0443300-00	AT1G71380.1	20706207
AT4G35620.1	Os03t0132200-01	AT3G45970.1	20706207
AT4G35620.1	Os06t0725300-01	AT3G45970.1	20706207
AT4G35620.1	Os07t0475400-01	AT3G45970.1	20706207
AT4G35620.1	Os10t0542400-01	AT3G45970.1	20706207
AT4G35620.1	Os09t0553100-00	AT3G53730.1	20706207
AT4G35620.1	Os04t0485000-01	AT4G24820.1	20706207
AT4G35620.1	Os01t0803200-01	AT5G12140.1	20706207
AT4G35620.1	Os05t0494200-02	AT5G12140.1	20706207
AT4G35620.1	Os03t0710800-01	AT5G38480.1	20706207
AT4G35620.1	Os11t0546900-01	AT5G38480.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G404800.1	Wheat	nucleus	74.05	76.79
TraesCS2B01G422800.1	Wheat	nucleus	72.86	74.82
TraesCS2D01G401700.1	Wheat	nucleus, plastid	73.33	73.16
Zm00001d026129_P001	Maize	nucleus	72.86	71.83
EES12664	Sorghum	nucleus	73.57	71.53
Zm00001d002662_P010	Maize	nucleus	74.05	68.35
CDY31481	Canola	nucleus	35.0	67.74
PGSC0003DMT400075380	Potato	nucleus	37.86	67.09
GSMUA_Achr5P19270_001	Banana	cytosol	34.05	65.9
HORVU2Hr1G096070.2	Barley	nucleus	71.67	63.91
GSMUA_Achr11P...	Banana	nucleus	56.9	58.58
GSMUA_Achr8P13320_001	Banana	nucleus	58.1	58.1
GSMUA_Achr5P19110_001	Banana	nucleus	58.1	57.55
Os06t0726800-01	Rice	nucleus	56.67	56.8
CDX85942	Canola	nucleus	52.86	54.41
Solyc04g082430.2.1	Tomato	nucleus	50.71	54.2
VIT_18s0001g14170.t01	Wine grape	nucleus	56.9	54.2
Bra003727.1-P	Field mustard	nucleus	49.29	54.05
KRH28901	Soybean	nucleus	54.76	53.12
VIT_03s0038g02800.t01	Wine grape	nucleus, plastid	53.57	53.07
KRH76553	Soybean	nucleus	54.29	52.78
KRH60628	Soybean	nucleus	50.71	52.59
Bra016460.1-P	Field mustard	nucleus	51.19	52.44
CDY33634	Canola	nucleus	50.71	52.21
CDX96631	Canola	nucleus	50.95	52.2
CDX68105	Canola	nucleus	49.05	52.15
PGSC0003DMT400093973	Potato	nucleus	40.71	51.82
KRH51329	Soybean	nucleus, plastid	51.19	51.81
PGSC0003DMT400048062	Potato	nucleus	53.1	51.74
Solyc03g032190.2.1	Tomato	nucleus	52.86	51.51
Bra015762.1-P	Field mustard	nucleus	52.86	51.51
CDX88261	Canola	nucleus	52.62	51.4
CDX87612	Canola	nucleus	52.62	51.28
PGSC0003DMT400003868	Potato	nucleus	52.62	51.04
Solyc02g082820.2.1	Tomato	nucleus	52.14	50.46
CDX72551	Canola	nucleus	48.1	50.37
PGSC0003DMT400025854	Potato	nucleus	52.86	50.34
Bra025831.1-P	Field mustard	nucleus	49.05	50.24
CDY07838	Canola	nucleus	50.0	50.24
Bra024504.1-P	Field mustard	nucleus	50.0	50.12
CDY29184	Canola	nucleus	50.0	50.12
AT1G20610.1	Thale cress	nucleus	50.95	49.88
Solyc02g061650.1.1	Tomato	nucleus	41.67	49.86
AT1G20590.1	Thale cress	cytosol, golgi, nucleus, plastid	31.43	49.81
CDY67210	Canola	nucleus	48.1	49.75
Bra017726.1-P	Field mustard	nucleus	48.1	49.75
CDY26816	Canola	nucleus	48.1	49.63
CDY29520	Canola	nucleus	48.33	49.51
AT1G76310.3	Thale cress	nucleus	54.05	49.46
Solyc12g094600.1.1	Tomato	nucleus	49.76	49.18
CDY30357	Canola	nucleus	47.86	49.14
AT4G35620.1	Thale cress	nucleus	50.0	48.95
Bra037265.1-P	Field mustard	nucleus	47.62	48.9
AT2G17620.1	Thale cress	nucleus	49.29	48.25
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	58.81	36.98
Os05t0237100-01	Rice	extracellular	16.9	36.04
Os01t0281200-01	Rice	nucleus	35.95	35.7
Os05t0493500-00	Rice	nucleus	36.43	31.42
Os02t0627800-00	Rice	cytosol, mitochondrion, peroxisome	27.86	29.55
Os12t0581800-01	Rice	nucleus, plastid	23.81	25.97
Os12t0298950-00	Rice	nucleus	25.95	24.38
Os12t0502300-01	Rice	nucleus, plastid	28.33	24.29
Os01t0233100-00	Rice	nucleus, plastid	26.67	22.81
Os01t0233500-01	Rice	nucleus, plastid	26.43	21.85
Os03t0208700-00	Rice	nucleus	20.0	20.54
Os03t0607600-00	Rice	nucleus	25.0	17.27
Os03t0208800-00	Rice	nucleus	7.38	7.81

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.2	EntrezGene:4336670	EMBL:AB024987	ProteinID:BAF15478.1	ProteinID:BAS90502.1
ProteinID:CAE01925.2	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	ProteinID:EEE61503.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007049	GO:GO:0008150
GO:GO:0009987	GO:GO:0051301	EnsemblPlantsGene:Os04g0563700	EnsemblPlants:Os04t0563700-01	PFAM:PF00134	PFAM:PF02984
PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF350	UniProt:Q7XSJ6	SMART:SM00385
SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000021C7BC	RefSeq:XP_015634273.1	:	:

Description

CYCLIN-B2-1Cyclin. (Os04t0563700-01)

Coordinates

chr4:-:28218760..28221536

Molecular Weight (calculated)

47296.9 Da

IEP (calculated)

5.134

GRAVY (calculated)

-0.297

Length

420 amino acids

Sequence
(BLAST)

001: MDRASENRRL AAVGKPVPGI GEMGNRRPLR DINNLVGAPP HPSAIAKKPM LEKSGKEEQK PALVVSHRPM TRNFAASLTR KEQLDHQVSV ADAAVVCTDP
101: QKNPIPDGTV DDDVESCESN DYIAVDECND TDEDESMMDI DSADSGNPLA ATEYVEELYK FYRENEEMSC VQPDYMSSQG DINEKMRAIL IDWLIEVHHK
201: FELMDETLFL TVNIVDRFLE KQVVPRKKLQ LVGVTAMLLA CKYEEVAVPV VEDLVLISDR AYTKGQILEM EKLILNTLQF NMSVPTPYVF MRRFLKAAQS
301: DKQLQLLSFF ILELSLVEYQ MLKYRPSLLA AAAVYTAQCA LTRCQQWTKT CELHSRYTGE QLLECSRMMV DFHQKAGAGK LTGVHRKYST FKFGCAAKTE
401: PALFLLESGA GGYNLQKQPC

Best Arabidopsis Sequence Match ( AT1G76310.1 )
(BLAST)

001: MGGSDENRHG VIGPMNRQQG GLRGGKVIPT NGQTRRALSN INKNIIGAPV YPCAVKRPFT EKNGICNKKI PPVPVHRPVT RKFAAQLAEN NLQIHKEETK
101: KPDLISNEAL DRIITDVEEG DFNEPMFVQH TEAMLEEIDK MEGIEMQDSN DIDAEVEESV MDIDSCDKNN PLSVVEYIND IYCFYKKNEC RSCVPPNYME
201: NQHDINERMR GILFDWLIEV HYKFELMEET LYLTINLIDR FLAVHQHIAR KKLQLVGVTA MLLACKYEEV SVPVVDDLIL ISDKAYTRTE ILDMEKLMAN
301: TLQFNFCLPT PYVFMRRFLK AAQSDKKLEL LSFFMIELCL VEYEMLQYTP SQLAASAIYT AQSTLKGYED WSKTSEFHSG YTEEALLECS RKMVGLHHKA
401: GTGKLTGVHR KYNTSKFGYA ARIEPAGFLL L

Arabidopsis Description

CYCB2;4CYCLIN B2;4 [Source:TAIR;Acc:AT1G76310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.