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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, peroxisome, mitochondrion

Predictor Summary:
  • nucleus 3
  • peroxisome 1
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, peroxisome
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:peroxisome
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0611000-01
Os01t0897000-01
Os01t0900800-01
Os02t0123100-01
Os02t0205200-01
Os02t0527500-00
Os02t0603600-01
Os03t0146300-01
Os03t0328501-00
Os03t0352300-01
Os04t0443300-00
Os04t0485000-01
Os04t0489600-02
Os04t0494600-01
Os04t0494800-01
Os04t0494900-01
Os04t0494950-01
Os04t0495000-00
Os04t0608500-01
Os04t0620700-01
Os04t0661900-01
Os05t0156600-01
Os07t0132600-00
Os07t0661800-01
Os08t0192900-01
Os08t0224700-01
Os08t0512600-01
Os09t0446200-01
Os10t0577200-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G11520.1 Os01t0900800-01 AT1G05805.1 20706207
AT3G11520.1 Os02t0603600-01 AT1G05805.1 20706207
AT3G11520.1 Os04t0489600-02 AT1G05805.1 20706207
AT3G11520.1 Os03t0352300-01 AT1G56110.1 20706207
AT3G11520.1 Os07t0661800-01 AT1G56110.1 20706207
AT3G11520.1 Os05t0156600-01 AT3G61650.1 20706207
AT3G11520.1 Os09t0446200-01 AT5G06680.1 20706207
AT3G11520.1 Os10t0577200-01 AT5G46780.1 20706207
AT4G37490.1 Os08t0512600-01 AT1G20930.1 20706207
AT4G37490.1 Os08t0512600-01 AT1G76540.1 20706207
AT4G37490.1 Os02t0123100-01 AT3G48750.1 12065421
AT4G37490.1 Os01t0897000-01 AT3G54180.1 12065421
AT5G06150.1 Os04t0608500-01 AT1G04810.1 20706207
AT5G06150.1 Os08t0224700-01 AT1G04810.1 20706207
AT5G06150.1 Os08t0512600-01 AT1G20930.1 20706207
AT5G06150.1 Os04t0620700-01 AT1G48920.1 20706207
AT5G06150.1 Os08t0192900-01 AT1G48920.1 20706207
AT5G06150.1 Os04t0443300-00 AT1G71380.1 20706207
AT5G06150.1 Os03t0146300-01 AT2G27960.1 20706207
AT5G06150.1 Os03t0146300-01 AT2G27970.1 20706207
AT5G06150.1 Os04t0661900-01 AT3G11270.1 20706207
AT5G06150.1 Os01t0897000-01 AT3G54180.1 20706207
AT5G06150.1 Os04t0485000-01 AT4G24820.1 20706207
AT5G06150.1 Os01t0611000-01 AT5G25460.1 20706207
AT5G06150.1 Os02t0205200-01 AT5G25460.1 20706207
AT5G06150.1 Os02t0527500-00 AT5G25460.1 20706207
AT5G06150.1 Os03t0328501-00 AT5G25460.1 20706207
AT5G06150.1 Os04t0494600-01 AT5G25460.1 20706207
AT5G06150.1 Os04t0494800-01 AT5G25460.1 20706207
AT5G06150.1 Os04t0494900-01 AT5G25460.1 20706207
AT5G06150.1 Os04t0494950-01 AT5G25460.1 20706207
AT5G06150.1 Os04t0495000-00 AT5G25460.1 20706207
AT5G06150.1 Os07t0132600-00 AT5G25460.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os01t0281200-01 Rice nucleus 77.27 72.34
Zm00001d019469_P001 Maize extracellular 23.99 66.43
TraesCS3A01G192100.1 Wheat nucleus, plastid 59.6 57.0
TraesCS3D01G195200.1 Wheat plastid 59.34 56.9
EES02793 Sorghum nucleus 55.56 47.52
HORVU3Hr1G040990.2 Barley nucleus, plastid 57.07 45.94
Zm00001d008221_P001 Maize nucleus 54.55 45.09
Zm00001d020033_P001 Maize nucleus 54.55 39.71
Zm00001d020996_P001 Maize nucleus 53.79 39.15
CDY62475 Canola nucleus 34.09 38.46
CDY69551 Canola nucleus 34.34 38.31
KRH66720 Soybean endoplasmic reticulum, vacuole 19.19 38.19
AT2G26760.1 Thale cress nucleus 36.87 37.73
PGSC0003DMT400058457 Potato nucleus 38.13 36.12
PGSC0003DMT400015245 Potato nucleus 39.65 35.76
VIT_06s0009g02090.t01 Wine grape nucleus 37.63 35.65
VIT_08s0040g00930.t01 Wine grape nucleus 40.4 35.32
PGSC0003DMT400018480 Potato nucleus 37.88 35.29
Solyc10g078330.1.1 Tomato nucleus 37.63 35.22
Solyc01g009040.2.1 Tomato nucleus 38.64 35.17
Bra002046.1-P Field mustard nucleus 34.6 34.86
KRH73516 Soybean nucleus 38.38 34.55
KRG95055 Soybean nucleus 39.65 34.51
VIT_13s0067g01420.t01 Wine grape nucleus 40.15 34.42
Solyc06g073610.2.1 Tomato nucleus 38.13 34.32
AT3G11520.1 Thale cress nucleus 35.61 34.06
KRH66715 Soybean nucleus 33.59 33.93
KRH14611 Soybean nucleus 37.37 33.71
Bra028741.1-P Field mustard nucleus 35.1 33.49
KRH66713 Soybean nucleus 38.13 33.26
PGSC0003DMT400072211 Potato nucleus 38.89 33.19
Solyc10g080950.1.1 Tomato nucleus 38.64 33.12
CDX69311 Canola nucleus 34.85 32.94
Bra011769.1-P Field mustard nucleus 35.35 32.71
CDX75659 Canola nucleus 35.1 32.48
KRH66718 Soybean plastid 30.3 32.17
AT4G37490.1 Thale cress nucleus 34.6 32.01
Os05t0493500-00 Rice nucleus 38.89 31.62
Bra005880.1-P Field mustard nucleus, plastid 32.83 31.4
CDY11354 Canola plastid 34.09 31.18
AT5G06150.1 Thale cress nucleus 34.85 31.01
CDX80988 Canola plastid 33.08 30.61
Os06t0726800-01 Rice nucleus 31.06 29.36
KRG95056 Soybean cytosol 28.28 28.94
Os04t0563700-01 Rice mitochondrion 29.55 27.86
AT1G34460.5 Thale cress cytosol 27.53 21.89
Os12t0581800-01 Rice nucleus, plastid 21.21 21.82
Os05t0237100-01 Rice extracellular 10.61 21.32
CDY14091 Canola plastid 34.85 21.04
Os12t0298950-00 Rice nucleus 22.22 19.69
CDY04980 Canola nucleus 35.1 19.36
Os12t0502300-01 Rice nucleus, plastid 23.74 19.18
Os01t0233100-00 Rice nucleus, plastid 23.74 19.14
Os01t0233500-01 Rice nucleus, plastid 24.24 18.9
Os03t0208700-00 Rice nucleus 18.43 17.85
Os03t0607600-00 Rice nucleus 21.46 13.98
Os03t0208800-00 Rice nucleus 5.3 5.29
Protein Annotations
EnsemblPlants:Os02t0627800-00EnsemblPlantsGene:Os02g0627800Gene3D:1.10.472.10InterPro:Cyclin-likeInterPro:Cyclin-like_sfInterPro:Cyclin_N
PANTHER:PTHR10177PANTHER:PTHR10177:SF211PFAM:PF00134PIRSF:PIRSF001771ProteinID:BAS79872.1SEG:seg
SMART:SM00385SUPFAM:SSF47954UniParc:UPI000393AA1EUniProt:A0A0P0VLX4MapMan:35.1:
Description
Similar to Isoform 2 of Cyclin-B1-3. (Os02t0627800-00)
Coordinates
chr2:-:25072518..25076274
Molecular Weight (calculated)
44811.3 Da
IEP (calculated)
9.513
GRAVY (calculated)
-0.201
Length
396 amino acids
Sequence
(BLAST)
001: MCSCGFFYGF LSDRRFIVKL YGFDTDAAKI VRRPKITTVV AQQPPGIRRA LADVSNLVNG RAALPVVNRQ KAPAAADKCR KPIKQRNENN KAKPEVIVIS
101: SDSEKQKKSP AQRAASRRAP IQTLTSILTK CSRASGGVIS PKKELIYDID ASDAHNELAV IDYVEDIYRF YRSTENTYRP LCTYMVSQTE INERMRAILT
201: DWLIEVHYRL MLMPETLYLT VYIIDQYLSL ENVARNELQL VGVSAMLIAC KYEETWAPLF KDFLVISDNS FSRQQVLSTE KSILNKLQWN LTVPTMYMFI
301: LRYLKAALGD KELEHMTSVI AAAAVYAARC TLGPCPEPTM ERSSGVPHRL SRATIARYYP SNDPSPFVLQ KFEFAHKSSP VTSCEGSMIA NLKFRN
Best Arabidopsis Sequence Match ( AT2G26760.1 )
(BLAST)
001: MASSRVSDLP HQRGIAGEIK PKNVAGHGRQ NRKVLGDIGN LVTGRDVATG KDVAKKAKQP QQQTKAEVIV ISPDENEKCK PHFSRRTHIR GTKTFTATLR
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
Arabidopsis Description
CYCB1-4CYCB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VPU5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.