Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69551 | Canola | nucleus | 99.15 | 98.03 |
| Bra002046.1-P | Field mustard | nucleus | 93.73 | 83.72 |
| AT3G11520.1 | Thale cress | nucleus | 78.92 | 66.91 |
| TraesCSU01G217300.1 | Wheat | cytosol | 35.33 | 57.41 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 31.91 | 56.28 |
| CDY11354 | Canola | plastid | 68.38 | 55.43 |
| CDX80988 | Canola | plastid | 66.38 | 54.44 |
| Zm00001d019469_P001 | Maize | extracellular | 20.51 | 50.35 |
| KXG24389 | Sorghum | nucleus | 35.04 | 48.81 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 58.97 | 45.7 |
| KRH66715 | Soybean | nucleus | 50.71 | 45.41 |
| CDX69311 | Canola | nucleus | 54.13 | 45.35 |
| CDX75659 | Canola | nucleus | 54.99 | 45.09 |
| KRG95055 | Soybean | nucleus | 58.12 | 44.84 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.61 | 44.3 |
| KRH66713 | Soybean | nucleus | 57.27 | 44.27 |
| HORVU0Hr1G001680.1 | Barley | nucleus | 39.6 | 43.44 |
| Solyc10g078330.1.1 | Tomato | nucleus | 51.85 | 43.03 |
| Solyc10g080950.1.1 | Tomato | nucleus | 56.41 | 42.86 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 56.41 | 42.86 |
| PGSC0003DMT400018480 | Potato | nucleus | 51.85 | 42.82 |
| KRH66718 | Soybean | plastid | 45.01 | 42.36 |
| PGSC0003DMT400072211 | Potato | nucleus | 55.56 | 42.03 |
| GSMUA_Achr10P... | Banana | nucleus | 53.56 | 41.5 |
| GSMUA_Achr4P10090_001 | Banana | nucleus | 49.86 | 41.18 |
| GSMUA_Achr7P21380_001 | Banana | nucleus | 53.56 | 41.14 |
| GSMUA_Achr3P24980_001 | Banana | nucleus | 47.01 | 41.04 |
| GSMUA_Achr8P23970_001 | Banana | nucleus | 50.71 | 40.92 |
| TraesCS1D01G309300.1 | Wheat | nucleus, plastid | 50.71 | 40.83 |
| HORVU1Hr1G068080.1 | Barley | plastid | 39.6 | 40.64 |
| HORVU3Hr1G078880.2 | Barley | nucleus | 52.42 | 40.62 |
| TraesCS1A01G309800.1 | Wheat | nucleus | 50.43 | 40.6 |
| TraesCS3D01G326600.1 | Wheat | nucleus | 52.14 | 40.22 |
| TraesCS1B01G320900.1 | Wheat | nucleus, plastid | 49.86 | 40.14 |
| TraesCS3A01G333000.2 | Wheat | nucleus | 52.42 | 40.0 |
| TraesCS3B01G363200.3 | Wheat | nucleus | 52.42 | 39.91 |
| KRG95056 | Soybean | cytosol | 43.02 | 39.02 |
| Zm00001d012560_P002 | Maize | nucleus, plastid | 49.86 | 38.98 |
| EES03772 | Sorghum | nucleus, plastid | 49.57 | 38.75 |
| TraesCS1D01G309400.1 | Wheat | nucleus | 48.15 | 38.67 |
| HORVU0Hr1G026010.1 | Barley | nucleus, plastid | 48.72 | 38.6 |
| HORVU1Hr1G068160.2 | Barley | nucleus, plastid | 48.72 | 38.6 |
| HORVU1Hr1G068010.7 | Barley | mitochondrion, nucleus | 45.58 | 38.1 |
| TraesCS1B01G321000.1 | Wheat | nucleus | 47.29 | 38.07 |
| Zm00001d010656_P001 | Maize | nucleus | 47.86 | 37.67 |
| CDY31481 | Canola | nucleus | 23.08 | 37.33 |
| HORVU0Hr1G001690.16 | Barley | nucleus, peroxisome | 45.87 | 36.76 |
| Os01t0281200-01 | Rice | nucleus | 44.16 | 36.64 |
| CDY14091 | Canola | plastid | 68.38 | 36.59 |
| TraesCS7A01G229300.1 | Wheat | endoplasmic reticulum | 33.9 | 36.17 |
| TraesCS3D01G195200.1 | Wheat | plastid | 42.45 | 36.08 |
| EES18429 | Sorghum | mitochondrion | 46.72 | 35.65 |
| TraesCS3A01G192100.1 | Wheat | nucleus, plastid | 41.88 | 35.51 |
| Zm00001d043164_P002 | Maize | nucleus | 48.43 | 35.12 |
| CDY26816 | Canola | nucleus | 39.6 | 34.15 |
| Os02t0627800-00 | Rice | cytosol, mitochondrion, peroxisome | 38.46 | 34.09 |
| CDY06752 | Canola | nucleus | 27.64 | 34.04 |
| CDY29184 | Canola | nucleus | 40.17 | 33.65 |
| CDX85942 | Canola | nucleus | 39.03 | 33.58 |
| CDY07838 | Canola | nucleus | 39.89 | 33.49 |
| Os05t0493500-00 | Rice | nucleus | 46.15 | 33.26 |
| CDY30357 | Canola | nucleus | 38.75 | 33.25 |
| CDY04980 | Canola | nucleus | 67.81 | 33.15 |
| CDX72551 | Canola | nucleus | 37.32 | 32.67 |
| CDY67210 | Canola | nucleus | 37.04 | 32.02 |
| CDX68105 | Canola | nucleus | 35.9 | 31.9 |
| CDX96631 | Canola | nucleus | 37.04 | 31.71 |
| CDX88261 | Canola | nucleus | 38.75 | 31.63 |
| CDX87612 | Canola | nucleus | 38.75 | 31.55 |
| EES02793 | Sorghum | nucleus | 41.6 | 31.53 |
| CDY33634 | Canola | nucleus | 36.47 | 31.37 |
| CDY23653 | Canola | nucleus | 31.62 | 31.09 |
| CDY29520 | Canola | nucleus | 36.18 | 30.98 |
| CDY06757 | Canola | nucleus, plastid | 31.62 | 30.58 |
| CDY66770 | Canola | nucleus | 31.05 | 30.11 |
| Zm00001d008221_P001 | Maize | nucleus | 41.03 | 30.06 |
| CDY17037 | Canola | nucleus, plastid | 31.05 | 29.95 |
| CDY47595 | Canola | nucleus, plastid | 31.62 | 29.92 |
| HORVU3Hr1G040990.2 | Barley | nucleus, plastid | 41.6 | 29.67 |
| CDY22369 | Canola | nucleus | 29.63 | 29.63 |
| CDY17091 | Canola | nucleus | 30.2 | 29.61 |
| CDY47596 | Canola | nucleus | 30.48 | 29.48 |
| CDY17039 | Canola | nucleus | 30.2 | 29.2 |
| CDX88368 | Canola | plastid | 29.91 | 27.63 |
| CDY41784 | Canola | plastid | 26.21 | 27.06 |
| CDY62408 | Canola | nucleus, plasma membrane, plastid | 15.95 | 26.54 |
| CDX87520 | Canola | nucleus | 29.06 | 26.42 |
| CDY61993 | Canola | nucleus | 28.21 | 26.26 |
| CDX87087 | Canola | plastid | 30.77 | 25.9 |
| Zm00001d020033_P001 | Maize | nucleus | 39.89 | 25.74 |
| CDY48212 | Canola | nucleus | 27.64 | 25.73 |
| CDX85466 | Canola | plastid | 30.77 | 25.59 |
| Zm00001d020996_P001 | Maize | nucleus | 39.32 | 25.37 |
| CDX92090 | Canola | mitochondrion, nucleus | 25.64 | 25.21 |
| CDY02719 | Canola | plastid | 30.77 | 25.17 |
| CDY53304 | Canola | plastid | 29.06 | 24.94 |
| CDX81722 | Canola | nucleus, plastid | 28.49 | 24.81 |
| CDY65994 | Canola | plastid | 31.05 | 24.61 |
| CDY25649 | Canola | plastid | 29.91 | 24.03 |
| CDY66415 | Canola | nucleus | 29.34 | 23.73 |
| CDX96836 | Canola | nucleus, plastid | 29.63 | 23.64 |
| CDX97090 | Canola | nucleus | 29.34 | 23.62 |
| CDX79389 | Canola | plastid | 29.06 | 23.56 |
| CDY36574 | Canola | mitochondrion, nucleus | 29.06 | 23.39 |
| CDX69768 | Canola | nucleus, plastid | 29.06 | 23.34 |
| CDX67944 | Canola | plastid | 28.49 | 23.15 |
| CDY39984 | Canola | plastid | 28.77 | 22.54 |
| CDY38664 | Canola | nucleus, plastid | 28.49 | 21.98 |
| CDY37592 | Canola | mitochondrion, plastid | 28.49 | 21.88 |
| CDX87305 | Canola | plastid | 28.21 | 21.43 |
| CDY33338 | Canola | nucleus | 34.76 | 20.89 |
| CDY35083 | Canola | cytosol, endoplasmic reticulum, nucleus | 34.19 | 19.7 |
| CDX96819 | Canola | nucleus | 35.04 | 19.07 |
| CDX83953 | Canola | nucleus | 34.47 | 18.47 |
| CDY19803 | Canola | golgi, nucleus, plasma membrane, plastid | 31.05 | 11.02 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.2 | GO:A0A078JCN7 | UniProt:A0A078JCN7 | EnsemblPlants:CDY62475 | ProteinID:CDY62475 |
| ProteinID:CDY62475.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00036318001 | PFAM:PF00134 | PFAM:PF02984 |
| PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF267 | SMART:SM00385 | SMART:SM01332 |
| SUPFAM:SSF47954 | UniParc:UPI0004EE20A8 | SEG:seg | : | : | : |
Description
BnaC01g44890DBnaC01g44890D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JCN7]
Coordinates
chrLK034149:+:35934..37325
Molecular Weight (calculated)
39882.1 Da
IEP (calculated)
6.271
GRAVY (calculated)
-0.144
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MATRRVRGDP VENRRALGDI GNIASLPGAE EAGKLNRPLT RNFRAQLLEN ANKKDVAKNQ EGVRAVQRKA RAAVVVKPTQ PHEVIVISPD TNEVAKAKKN
101: VTYSSVLNAR SKALDIDSAD KDNDLAAVEY VEDMYSFYKE VENESKPQMY MQTQTEINEK MRSILVDWLV DVHVKFDLSP ETLYLTINIV DRFLSLKPVP
201: RRELQLVGVS ALLIASKYEE IWPPQVNDLV YVTDNSYQSK QILVMEKTIL GNLEWYLTVP TQYVFLARFI KAAVPDPEME SMVHFLAELG LMHYDALKFC
301: PSMLAASAVY AARCFLSKTP AWTETLTFHT GYSEHELMLV ILFYFFSLPC F
101: VTYSSVLNAR SKALDIDSAD KDNDLAAVEY VEDMYSFYKE VENESKPQMY MQTQTEINEK MRSILVDWLV DVHVKFDLSP ETLYLTINIV DRFLSLKPVP
201: RRELQLVGVS ALLIASKYEE IWPPQVNDLV YVTDNSYQSK QILVMEKTIL GNLEWYLTVP TQYVFLARFI KAAVPDPEME SMVHFLAELG LMHYDALKFC
301: PSMLAASAVY AARCFLSKTP AWTETLTFHT GYSEHELMLV ILFYFFSLPC F
001: MATGPVVHPQ PVRGDPIDLK NAAAKNRRAL GDIGNVDSLI GVEGGKLNRP ITRNFRAQLL ENAQVAAAAN KKAPILDGVT KKQEVVRAVQ KKARGDKREP
101: SKPIEVIVIS PDTNEVAKAK ENKKKVTYSS VLDARSKAAS KTLDIDYVDK ENDLAAVEYV EDMYIFYKEV VNESKPQMYM HTQPEIDEKM RSILIDWLVE
201: VHVKFDLSPE TLYLTVNIID RFLSLKTVPR RELQLVGVSA LLIASKYEEI WPPQVNDLVY VTDNSYNSRQ ILVMEKTILG NLEWYLTVPT QYVFLVRFIK
301: ASGSDQKLEN LVHFLAELGL MHHDSLMFCP SMLAASAVYT ARCCLNKTPT WTDTLKFHTG YSESQLMLVF LILYTSKFVI ILFVY
101: SKPIEVIVIS PDTNEVAKAK ENKKKVTYSS VLDARSKAAS KTLDIDYVDK ENDLAAVEYV EDMYIFYKEV VNESKPQMYM HTQPEIDEKM RSILIDWLVE
201: VHVKFDLSPE TLYLTVNIID RFLSLKTVPR RELQLVGVSA LLIASKYEEI WPPQVNDLVY VTDNSYNSRQ ILVMEKTILG NLEWYLTVPT QYVFLVRFIK
301: ASGSDQKLEN LVHFLAELGL MHHDSLMFCP SMLAASAVYT ARCCLNKTPT WTDTLKFHTG YSESQLMLVF LILYTSKFVI ILFVY
Arabidopsis Description
CYCB1-3Cyclin-B1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q39069]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.