Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G217300.1 | Wheat | cytosol | 29.79 | 45.37 |
| TraesCS3D01G326600.1 | Wheat | nucleus | 56.84 | 41.1 |
| TraesCS3A01G333000.2 | Wheat | nucleus | 57.14 | 40.87 |
| HORVU3Hr1G078880.2 | Barley | nucleus | 55.32 | 40.18 |
| TraesCS3B01G363200.3 | Wheat | nucleus | 56.23 | 40.13 |
| KXG24389 | Sorghum | nucleus | 30.4 | 39.68 |
| EES03772 | Sorghum | nucleus, plastid | 48.33 | 35.41 |
| Zm00001d012560_P002 | Maize | nucleus, plastid | 47.72 | 34.97 |
| CDY69551 | Canola | nucleus | 37.69 | 34.93 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 20.67 | 34.17 |
| CDY62475 | Canola | nucleus | 36.17 | 33.9 |
| TraesCS1A01G309800.1 | Wheat | nucleus | 44.68 | 33.72 |
| AT3G11520.1 | Thale cress | nucleus | 41.95 | 33.33 |
| AT2G26760.1 | Thale cress | nucleus | 38.91 | 33.07 |
| Bra002046.1-P | Field mustard | nucleus | 39.21 | 32.82 |
| PGSC0003DMT400058457 | Potato | nucleus | 41.03 | 32.3 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.18 | 32.21 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 44.07 | 32.01 |
| Solyc01g009040.2.1 | Tomato | nucleus | 42.25 | 31.95 |
| VIT_06s0009g02090.t01 | Wine grape | nucleus | 40.43 | 31.82 |
| Bra028741.1-P | Field mustard | nucleus | 39.51 | 31.33 |
| KRH14611 | Soybean | nucleus | 41.64 | 31.21 |
| Zm00001d043164_P002 | Maize | nucleus | 45.9 | 31.2 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 38.6 | 30.68 |
| KRH73516 | Soybean | nucleus | 40.43 | 30.23 |
| KRG95055 | Soybean | nucleus | 41.64 | 30.11 |
| Solyc10g080950.1.1 | Tomato | nucleus | 41.95 | 29.87 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 41.95 | 29.87 |
| PGSC0003DMT400015245 | Potato | nucleus | 39.82 | 29.84 |
| CDY11354 | Canola | plastid | 39.21 | 29.79 |
| KRH66713 | Soybean | nucleus | 41.03 | 29.74 |
| TraesCS3A01G192100.1 | Wheat | nucleus, plastid | 37.39 | 29.71 |
| CDX80988 | Canola | plastid | 38.6 | 29.67 |
| AT5G06150.1 | Thale cress | nucleus | 40.12 | 29.66 |
| PGSC0003DMT400018480 | Potato | nucleus | 38.3 | 29.65 |
| Solyc10g078330.1.1 | Tomato | nucleus | 37.99 | 29.55 |
| PGSC0003DMT400072211 | Potato | nucleus | 41.64 | 29.53 |
| Solyc06g073610.2.1 | Tomato | nucleus | 39.21 | 29.32 |
| KRH66715 | Soybean | nucleus | 34.65 | 29.08 |
| TraesCS2A01G404800.1 | Wheat | nucleus | 34.35 | 27.9 |
| CDX69311 | Canola | nucleus | 34.95 | 27.45 |
| AT4G37490.1 | Thale cress | nucleus | 35.56 | 27.34 |
| CDX75659 | Canola | nucleus | 35.26 | 27.1 |
| Bra011769.1-P | Field mustard | nucleus | 35.26 | 27.1 |
| KRH66718 | Soybean | plastid | 30.7 | 27.08 |
| TraesCS7A01G549500.1 | Wheat | nucleus | 33.74 | 26.49 |
| KRG95056 | Soybean | cytosol | 31.0 | 26.36 |
| TraesCS4A01G236700.2 | Wheat | plastid | 23.71 | 20.8 |
| TraesCS5A01G072000.1 | Wheat | plastid | 23.4 | 20.48 |
| TraesCS4A01G051300.1 | Wheat | nucleus | 20.97 | 20.12 |
| CDY14091 | Canola | plastid | 39.21 | 19.66 |
| AT1G34460.5 | Thale cress | cytosol | 29.48 | 19.48 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 21.58 | 18.68 |
| CDY04980 | Canola | nucleus | 39.51 | 18.11 |
| TraesCS5A01G108500.2 | Wheat | plastid | 26.44 | 17.13 |
| TraesCS3A01G523600.1 | Wheat | plastid | 26.14 | 16.96 |
| TraesCS3A01G157000.1 | Wheat | plastid | 24.32 | 15.59 |
| TraesCS1A01G138300.1 | Wheat | nucleus, plastid | 24.62 | 15.43 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G229300.1 | EnsemblPlantsGene:TraesCS7A01G229300 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF267 | PFAM:PF00134 | PIRSF:PIRSF001771 | SEG:seg | SMART:SM00385 |
| SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr7A:-:199438676..199441958
Molecular Weight (calculated)
36770.5 Da
IEP (calculated)
5.834
GRAVY (calculated)
0.068
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVADVRGVL LYRAGLVTAA ASVLVATSRA FLPEANTVGD AVRQGADLFY AVGAEGAHFP LHTQFTVLSH VLSARSKFAA RITEEPAIQD IDKLDGDNQL
101: AVVDYIEDIY KFYKVAEGLH GLPAEINAKM WGILIDWILE VHQKFDMMPE SLYLTVYIID MYLSLQSVLR RELQLVGVSA LLIACNYEEI WAHEVNDFIL
201: ISDSAYTREQ ILKMEKAILN MLEWNLTVPT PYVFLVRFTK VACSSSSDQK HDKECEHGSV AAINPTIRRR NAREASPPVM PRPDEAMMLT SLERINPGHG
301: TTFLVMRCLC SASTNKSSNL KVKKAEVYL
101: AVVDYIEDIY KFYKVAEGLH GLPAEINAKM WGILIDWILE VHQKFDMMPE SLYLTVYIID MYLSLQSVLR RELQLVGVSA LLIACNYEEI WAHEVNDFIL
201: ISDSAYTREQ ILKMEKAILN MLEWNLTVPT PYVFLVRFTK VACSSSSDQK HDKECEHGSV AAINPTIRRR NAREASPPVM PRPDEAMMLT SLERINPGHG
301: TTFLVMRCLC SASTNKSSNL KVKKAEVYL
001: MASSRVSDLP HQRGIAGEIK PKNVAGHGRQ NRKVLGDIGN LVTGRDVATG KDVAKKAKQP QQQTKAEVIV ISPDENEKCK PHFSRRTHIR GTKTFTATLR
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
Arabidopsis Description
CYCB1-4CYCB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VPU5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.