Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG24389 | Sorghum | nucleus | 58.33 | 50.0 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 43.52 | 47.24 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.0 | 36.24 |
| CDY62475 | Canola | nucleus | 57.41 | 35.33 |
| CDY69551 | Canola | nucleus | 57.41 | 34.93 |
| TraesCS3D01G326600.1 | Wheat | nucleus | 72.22 | 34.29 |
| TraesCS3B01G363200.3 | Wheat | nucleus | 72.22 | 33.84 |
| HORVU3Hr1G078880.2 | Barley | nucleus | 70.83 | 33.77 |
| TraesCS3A01G333000.2 | Wheat | nucleus | 71.76 | 33.7 |
| EES03772 | Sorghum | nucleus, plastid | 66.2 | 31.85 |
| Bra002046.1-P | Field mustard | nucleus | 57.87 | 31.81 |
| Zm00001d012560_P002 | Maize | nucleus, plastid | 64.35 | 30.96 |
| AT2G26760.1 | Thale cress | nucleus | 54.63 | 30.49 |
| PGSC0003DMT400058457 | Potato | nucleus | 57.87 | 29.9 |
| PGSC0003DMT400018480 | Potato | nucleus | 58.8 | 29.88 |
| TraesCS7A01G229300.1 | Wheat | endoplasmic reticulum | 45.37 | 29.79 |
| Solyc10g078330.1.1 | Tomato | nucleus | 57.87 | 29.55 |
| KRH66718 | Soybean | plastid | 50.93 | 29.49 |
| AT3G11520.1 | Thale cress | nucleus | 56.02 | 29.23 |
| Bra028741.1-P | Field mustard | nucleus | 56.02 | 29.16 |
| Zm00001d043164_P002 | Maize | nucleus | 65.28 | 29.13 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 55.56 | 28.99 |
| Solyc01g009040.2.1 | Tomato | nucleus | 58.33 | 28.97 |
| VIT_06s0009g02090.t01 | Wine grape | nucleus | 55.56 | 28.71 |
| KRH66715 | Soybean | nucleus | 50.93 | 28.06 |
| AT4G37490.1 | Thale cress | nucleus | 55.56 | 28.04 |
| CDY11354 | Canola | plastid | 56.02 | 27.94 |
| CDX80988 | Canola | plastid | 55.09 | 27.8 |
| CDX69311 | Canola | nucleus | 53.7 | 27.68 |
| PGSC0003DMT400015245 | Potato | nucleus | 56.02 | 27.56 |
| Solyc06g073610.2.1 | Tomato | nucleus | 55.56 | 27.27 |
| AT5G06150.1 | Thale cress | nucleus | 56.02 | 27.19 |
| Bra011769.1-P | Field mustard | nucleus | 53.7 | 27.1 |
| CDX75659 | Canola | nucleus | 53.7 | 27.1 |
| KRH73516 | Soybean | nucleus | 54.63 | 26.82 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 56.02 | 26.71 |
| KRH14611 | Soybean | nucleus | 54.17 | 26.65 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 56.94 | 26.62 |
| KRG95055 | Soybean | nucleus | 54.63 | 25.93 |
| Solyc10g080950.1.1 | Tomato | nucleus | 55.09 | 25.76 |
| KRH66713 | Soybean | nucleus | 53.7 | 25.55 |
| PGSC0003DMT400072211 | Potato | nucleus | 54.63 | 25.43 |
| KRG95056 | Soybean | cytosol | 43.52 | 24.29 |
| CDY14091 | Canola | plastid | 55.56 | 18.29 |
| TraesCSU01G054300.1 | Wheat | nucleus | 39.81 | 17.17 |
| CDY04980 | Canola | nucleus | 56.02 | 16.85 |
| AT1G34460.5 | Thale cress | cytosol | 36.11 | 15.66 |
Protein Annotations
| EnsemblPlants:TraesCSU01G217300.1 | EnsemblPlantsGene:TraesCSU01G217300 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF267 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | SMART:SM00385 | SUPFAM:SSF47954 |
| TIGR:cd00043 | TMHMM:TMhelix | MapMan:13.1.1.1.2 | : | : | : |
Description
No Description!
Coordinates
chrUn:+:320881856..320882782
Molecular Weight (calculated)
25303.1 Da
IEP (calculated)
9.063
GRAVY (calculated)
0.007
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYVNDLYKF YKVAENERRP RDYIHSQVHL SSKMQAILVD WIIEVHDEFD LMPETLYLTA YIIDRYLTKQ LVLRRELQLV GVSALLIACK YEEMMFPQVR
101: DLVSITDNAY SRKQILRMEK AILNRLGWNL TVPTPYVFLA RFAMAASYFN LKNYGEMMNM VSFFAELALM QYALVPSKPS MVAVAAVYAA RLTLKKTDSW
201: TRTLKHYTGF TESQLM
101: DLVSITDNAY SRKQILRMEK AILNRLGWNL TVPTPYVFLA RFAMAASYFN LKNYGEMMNM VSFFAELALM QYALVPSKPS MVAVAAVYAA RLTLKKTDSW
201: TRTLKHYTGF TESQLM
001: MASSRVSDLP HQRGIAGEIK PKNVAGHGRQ NRKVLGDIGN LVTGRDVATG KDVAKKAKQP QQQTKAEVIV ISPDENEKCK PHFSRRTHIR GTKTFTATLR
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
101: ARSKAASGLK DAVIDIDAVD ANNELAAVEY VEDIFKFYRT VEEEGGIKDY IGSQPEINEK MRSILIDWLV DVHRKFELMP ETLYLTINLV DRFLSLTMVH
201: RRELQLLGLG AMLIACKYEE IWAPEVNDFV CISDNAYNRK QVLAMEKSIL GQVEWYITVP TPYVFLARYV KAAVPCDAEM EKLVFYLAEL GLMQYPIVVL
301: NRPSMLAASA VYAARQILKK TPFWTETLKH HTGYSEDEIM EHAKMLMKLR DSASESKLIA VFKKYSVSEN AEVALLPSLD DFSVSCA
Arabidopsis Description
CYCB1-4CYCB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VPU5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.