Factsheet for TraesCS7D01G289200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G183600.1	Wheat	nucleus	89.69	90.96
HORVU7Hr1G068630.2	Barley	nucleus	88.11	88.11
TraesCS7A01G286200.1	Wheat	nucleus	86.54	81.41
Os08t0192900-01	Rice	nucleus	58.04	58.04
GSMUA_Achr10P...	Banana	nucleus	28.32	55.67
GSMUA_Achr11P...	Banana	nucleus	26.92	50.83
VIT_05s0020g00100.t01	Wine grape	mitochondrion	10.84	46.62
EES14672	Sorghum	nucleus	50.52	44.67
Bra032269.1-P	Field mustard	nucleus	34.09	44.32
CDY60074	Canola	nucleus	34.09	44.32
CDY65178	Canola	nucleus	36.36	43.15
Bra018764.1-P	Field mustard	nucleus	36.71	42.0
Zm00001d049399_P001	Maize	plasma membrane	51.05	41.71
CDX93706	Canola	nucleus	36.36	41.52
Bra022338.1-P	Field mustard	nucleus	18.01	39.46
TraesCS2D01G465200.1	Wheat	nucleus	48.78	38.17
CDY59893	Canola	nucleus	34.09	38.16
CDX77274	Canola	nucleus	38.46	38.0
AT1G48920.1	Thale cress	nucleus	36.89	37.88
Bra014162.1-P	Field mustard	nucleus	38.29	37.69
CDX92253	Canola	nucleus	18.53	37.59
PGSC0003DMT400003013	Potato	nucleus	40.91	37.38
Solyc02g014310.2.1	Tomato	nucleus	38.99	35.34
VIT_01s0011g02180.t01	Wine grape	nucleus	41.43	33.38
Bra018762.1-P	Field mustard	nucleus	37.59	33.33
CDY16474	Canola	nucleus	28.15	33.26
KRH24189	Soybean	nucleus	42.31	32.53
KRH29160	Soybean	nucleus	42.48	32.49
CDX93704	Canola	nucleus	37.59	31.52
AT3G18610.1	Thale cress	nucleus	34.27	30.82
CDX92252	Canola	nucleus	32.34	30.78
Bra022337.1-P	Field mustard	nucleus	31.99	30.6
CDX99340	Canola	nucleus	32.87	30.08
CDY20455	Canola	nucleus	12.41	23.51
CDX99339	Canola	nucleus	22.03	21.5
KRH40855	Soybean	nucleus	25.0	20.85
KRG89142	Soybean	nucleus	24.48	20.29
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	13.29	14.73

Protein Annotations

EnsemblPlants:TraesCS7D01G289200.1	EnsemblPlantsGene:TraesCS7D01G289200	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:NUCL_RRM2	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44110	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
TIGR:cd12451	MapMan:17.1.1.1.1	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:329803970..329808272

Molecular Weight (calculated)

59452.1 Da

IEP (calculated)

5.134

GRAVY (calculated)

-1.081

Length

572 amino acids

Sequence
(BLAST)

001: MGKSSKKSAA PTVVAPAAVL TKGKAGKKRE ADDEIEKAVS AKKQKAAPAK AVPGPKEAAK KAKKQPPPKK VESSSSEEES SESEEEEVPK KTAKPVKHES
101: SDDSSDDSSF DEEPAKKPSA KPVTPAASNG SKKGKPESSS SSSEDESDDD EKPAALVKRT PVIESDSSES DSDDSSDEDV PAKTPAAAAK KVDSSDSSES
201: ESESEDEEKS KKAAQATKIA PAAAKRKEES SDSSDSDESD EEPPQKKQKD AAKVAPKSAK KDSSSDDDSS DESSDDEPKK EVTTATKSQK EEPNTPASNK
301: GQATGSKTLW MGNLSFNIEY DQVKQFFAQI GEVVDVRLAT HEDGHPKGFG HVEFATAEDA QKALDSLNGG DLMGRPVRLD MAAERGASAP RTRDGGSFGK
401: PSGGPSLSVF VKGFDSSQQE DAIRSSLQEH FSKCGEITRV SVPMDYENGA SKGIAYMDFT DESSFSKALA LSGSDLGGCN LYVAEAKPKG QFGGVGGRSG
501: GRDGGRSGGG RFGRSGGRDG GGRFGRSGGR DGGGRFGRSG GRDGGRGGGR GFQSRQSAGT ASAGKKTTFG DD

Best Arabidopsis Sequence Match ( AT3G18610.1 )
(BLAST)

001: MGKSSKKSVT EVETPASMTK PLKKGKRDAE EDLDMQVTKK QKKELIDVVQ KEKAEKTVPK KVESSSSDAS DSDEEEKTKE TPSKLKDESS SEEEDDSSSD
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPVKKQP AVLEKAKIES SSSDDDSSSD EETVPMKKQT
201: AVLEKAKAES SSSDDGSSSD EEPTPAKKEP IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS
301: EEDSDEEESD DEKPPTKKAK VSSKTSKQES SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI
401: ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR
501: SHFSKCGEVT RVHVPTDRET GASRGFAYID LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS
601: DRGAPRGRFS TRGRGPSKPS VMESSKGTKT VFNDEE

Arabidopsis Description

NUCL2Nucleolin 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEP5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.