CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018762.1-P	Field mustard	nucleus	88.27	93.33
CDX93706	Canola	nucleus	57.18	77.84
CDY59893	Canola	nucleus	49.12	65.56
CDY60074	Canola	nucleus	42.23	65.45
CDY65178	Canola	nucleus	43.7	61.83
CDX77274	Canola	nucleus	46.48	54.75
AT1G48920.1	Thale cress	nucleus	41.5	50.81
GSMUA_Achr10P...	Banana	nucleus	18.77	43.99
GSMUA_Achr11P...	Banana	nucleus	19.35	43.56
CDY16474	Canola	nucleus	28.89	40.7
CDX92253	Canola	nucleus	16.57	40.07
TraesCS7B01G183600.1	Wheat	nucleus	31.96	38.65
HORVU7Hr1G068630.2	Barley	nucleus	31.82	37.94
Os08t0192900-01	Rice	nucleus	31.82	37.94
TraesCS7D01G289200.1	Wheat	nucleus	31.52	37.59
CDX92252	Canola	nucleus	32.55	36.94
CDX99340	Canola	nucleus	32.84	35.84
PGSC0003DMT400003013	Potato	nucleus	31.52	34.34
Solyc02g014310.2.1	Tomato	nucleus	31.52	34.07
TraesCS7A01G286200.1	Wheat	nucleus	29.62	33.22
Os04t0620700-01	Rice	nucleus	33.43	32.25
EER94106	Sorghum	nucleus	30.5	31.33
EES14672	Sorghum	nucleus	29.62	31.22
TraesCS2D01G465200.1	Wheat	nucleus	32.84	30.64
TraesCS2B01G486000.4	Wheat	nucleus	32.26	30.18
TraesCS2A01G464300.3	Wheat	nucleus	31.09	28.96
Zm00001d032748_P001	Maize	nucleus	32.55	28.91
CDY20455	Canola	nucleus	12.61	28.48
Zm00001d049399_P001	Maize	plasma membrane	29.03	28.29
CDX91465	Canola	nucleus	7.48	27.57
CDX91456	Canola	mitochondrion	5.57	26.76
CDX99339	Canola	nucleus	21.26	24.74
CDX91450	Canola	nucleus	7.48	24.52
CDX91458	Canola	nucleus	7.92	23.89
CDX91454	Canola	nucleus	7.48	22.67
CDX91457	Canola	mitochondrion	1.76	22.64
CDY26273	Canola	nucleus	7.04	22.22
CDY09605	Canola	mitochondrion, plastid	6.45	21.46
CDY54454	Canola	nucleus	7.18	20.85
CDY70171	Canola	cytosol, nucleus, plastid	7.48	20.82
CDX90410	Canola	nucleus	6.3	20.19
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	13.49	17.83
CDY09156	Canola	cytosol	7.77	17.1
CDX90296	Canola	nucleus	7.18	15.56
CDY12105	Canola	plastid	7.62	14.86

Protein Annotations

MapMan:17.1.1.1.1	Gene3D:3.30.70.330	GO:A0A078DZ39	EnsemblPlants:CDX93704	ProteinID:CDX93704	ProteinID:CDX93704.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00156393001	InterPro:IPR000504
InterPro:IPR012677	InterPro:NUCL_RRM1	InterPro:NUCL_RRM2	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE8B5F	SEG:seg

Description

BnaA06g03440D

Coordinates

chrLK031876:+:1434255..1438427

Molecular Weight (calculated)

72502.2 Da

IEP (calculated)

4.575

GRAVY (calculated)

-1.265

Length

682 amino acids

Sequence
(BLAST)

001: MGKKSATKVE AAPAAIKATK PLKKGKREPE DDLETKVNLK KQKKDVVAAV KKEKAEKKVP KKVESSDESD SSESEEEKKA KKVPAKKAPV KAASSSDDDD
101: SSSDDEPAPK KATNGTVAKK AKDESSSEEE SSDEEEVAVT KKPATAKPAS KDSSSSEEDS EDESEDEKVK PVAKKAAPVA TKAASSDSSE EDSDEESEDE
201: KPAQKAKEGT KKAEKDSSSD DSGSEESESE DEKETPKKKS SDVEMVDAEK QQAKKVPAKK APVKAASSSD DDDSSSDDEP TPKKATNGTV AKKAKDESSS
301: EEESSDEEEV AATKKPAAAK PAAKDSSSSE EDSEDESEDE KVKPVAKKAA PVATKAASSS ESSEEDSDEE SEDEKPAPKA KEGTKKAEKD SSSDDSGSEE
401: SESEDEKETP KKKSSDVEMV DAEKQQPKTP STPATGGTKT LFVGNLPFQV ERSDVEEFFK EAGQVVDVRF ATNRDDGSFR GFGHVEFASA GEAQKALEFH
501: GRPLLGRELR LDVAQERGER PAYTPQSGTG NNSRSGGGGG QEVFVKGFDS SLAPNDIKSA LTEHFASCGE ITRVSVPVDR ETGGSRGIAY VEFKEGTEKA
601: FELNGSDMGG WNLVVDQPRP KENNSGGGFN SGGGFNSGRS NSFSGGRDNF HGFRGRGRGG RDNGRGRPSF TSQGKKTVFN DE

Best Arabidopsis Sequence Match ( AT1G48920.1 )
(BLAST)

001: MGKSKSATKV VAEIKATKPL KKGKREPEDD IDTKVSLKKQ KKDVIAAVQK EKAVKKVPKK VESSDDSDSE SEEEEKAKKV PAKKAASSSD ESSDDSSSDD
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE

Arabidopsis Description

NUCL1Nucleolin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.