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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX91450 Canola nucleus 80.89 87.5
CDX91465 Canola nucleus 67.11 81.62
CDX91458 Canola nucleus 68.0 67.7
CDY54454 Canola nucleus 64.89 62.13
CDX91456 Canola mitochondrion 28.89 45.77
CDY09605 Canola mitochondrion, plastid 25.78 28.29
CDY26273 Canola nucleus 26.67 27.78
CDX90410 Canola nucleus 24.89 26.29
CDY70171 Canola cytosol, nucleus, plastid 27.56 25.31
OQU82679 Sorghum nucleus 17.78 23.95
CDY09156 Canola cytosol 30.22 21.94
CDX90296 Canola nucleus 30.22 21.59
CDY12105 Canola plastid 30.67 19.71
CDX92253 Canola nucleus 21.33 17.02
CDX91457 Canola mitochondrion 4.0 16.98
CDY60074 Canola nucleus 24.0 12.27
CDY65178 Canola nucleus 23.11 10.79
CDY59893 Canola nucleus 24.0 10.57
CDX93706 Canola nucleus 23.11 10.38
Zm00001d018553_P001 Maize endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole 13.78 10.3
CDY20455 Canola nucleus 13.33 9.93
CDX77274 Canola nucleus 24.89 9.67
CDY16474 Canola nucleus 20.44 9.5
CDX92252 Canola nucleus 24.89 9.32
CDX99340 Canola nucleus 22.22 8.0
CDX99339 Canola nucleus 20.0 7.68
CDX93704 Canola nucleus 22.67 7.48
CDY36208 Canola endoplasmic reticulum, mitochondrion, nucleus, vacuole 9.33 4.07
Protein Annotations
EnsemblPlants:CDX91454EnsemblPlantsGene:GSBRNA2T00152787001Gene3D:3.30.70.330GO:A0A078DSG7GO:GO:0003674GO:GO:0003676
GO:GO:0005488InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfInterPro:RBD_domain_sfInterPro:RRM_dom
ncoils:CoilPANTHER:PTHR43987PFAM:PF00076PFscan:PS50102ProteinID:CDX91454ProteinID:CDX91454.1
SEG:segSMART:SM00360SUPFAM:SSF54928UniParc:UPI0004EDB793MapMan:35.2:
Description
BnaC04g06960D
Coordinates
chrLK031867:+:1104650..1106048
Molecular Weight (calculated)
25454.0 Da
IEP (calculated)
9.614
GRAVY (calculated)
-0.918
Length
225 amino acids
Sequence
(BLAST)
001: MDQSKLKRCS ASSSSHAEAA AEATDPLQKA ERVLDDSETE VNSRKKQKQE EETTEKKKEC CFDTKDAKGN NERTLFVTGF DNSGSRDEIR SALAKHFSSC
101: GELARVFVHI ECETGVSRGY AFINLKKRVG IEAALSLNGS DLGGHKLLVT MARLRDEYYA HFNFKGCEIC RAGYTAGPQR LYRWNLRTGG GKVRRFSPKF
201: EEKCRRHHEE RMASRKMNKS KTKEG
Best Arabidopsis Sequence Match ( AT1G73490.1 )
(BLAST)
001: MDRRLKKCST STDVESVHDV SKVTDPLQKA KRELDNVEIK EKQKKQKNQN ETSEKETKKF STVYEKFNDT IKELDRVSGT CPIRPAIPFT PPKEKVEPIY
101: HNECNFDDKA HLGVSDSALF VQGFDTSHPR HEIKTALWNH FSSCGKVYLI YVPIACSTGA SVGYAFIDMK NETKGLTLNG SHLGGRKIDV MFAIDREEFY
201: FSSNLKHCQR CRNYRPWLVL KAMSDACFEY HQRIKPRIVG TPHSKIGRFT AIIGRRSYS
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HQ94]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.