Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX91450 | Canola | nucleus | 80.89 | 87.5 |
CDX91465 | Canola | nucleus | 67.11 | 81.62 |
CDX91458 | Canola | nucleus | 68.0 | 67.7 |
CDY54454 | Canola | nucleus | 64.89 | 62.13 |
CDX91456 | Canola | mitochondrion | 28.89 | 45.77 |
CDY09605 | Canola | mitochondrion, plastid | 25.78 | 28.29 |
CDY26273 | Canola | nucleus | 26.67 | 27.78 |
CDX90410 | Canola | nucleus | 24.89 | 26.29 |
CDY70171 | Canola | cytosol, nucleus, plastid | 27.56 | 25.31 |
OQU82679 | Sorghum | nucleus | 17.78 | 23.95 |
CDY09156 | Canola | cytosol | 30.22 | 21.94 |
CDX90296 | Canola | nucleus | 30.22 | 21.59 |
CDY12105 | Canola | plastid | 30.67 | 19.71 |
CDX92253 | Canola | nucleus | 21.33 | 17.02 |
CDX91457 | Canola | mitochondrion | 4.0 | 16.98 |
CDY60074 | Canola | nucleus | 24.0 | 12.27 |
CDY65178 | Canola | nucleus | 23.11 | 10.79 |
CDY59893 | Canola | nucleus | 24.0 | 10.57 |
CDX93706 | Canola | nucleus | 23.11 | 10.38 |
Zm00001d018553_P001 | Maize | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 13.78 | 10.3 |
CDY20455 | Canola | nucleus | 13.33 | 9.93 |
CDX77274 | Canola | nucleus | 24.89 | 9.67 |
CDY16474 | Canola | nucleus | 20.44 | 9.5 |
CDX92252 | Canola | nucleus | 24.89 | 9.32 |
CDX99340 | Canola | nucleus | 22.22 | 8.0 |
CDX99339 | Canola | nucleus | 20.0 | 7.68 |
CDX93704 | Canola | nucleus | 22.67 | 7.48 |
CDY36208 | Canola | endoplasmic reticulum, mitochondrion, nucleus, vacuole | 9.33 | 4.07 |
Protein Annotations
EnsemblPlants:CDX91454 | EnsemblPlantsGene:GSBRNA2T00152787001 | Gene3D:3.30.70.330 | GO:A0A078DSG7 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
ncoils:Coil | PANTHER:PTHR43987 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX91454 | ProteinID:CDX91454.1 |
SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EDB793 | MapMan:35.2 | : |
Description
BnaC04g06960D
Coordinates
chrLK031867:+:1104650..1106048
Molecular Weight (calculated)
25454.0 Da
IEP (calculated)
9.614
GRAVY (calculated)
-0.918
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQSKLKRCS ASSSSHAEAA AEATDPLQKA ERVLDDSETE VNSRKKQKQE EETTEKKKEC CFDTKDAKGN NERTLFVTGF DNSGSRDEIR SALAKHFSSC
101: GELARVFVHI ECETGVSRGY AFINLKKRVG IEAALSLNGS DLGGHKLLVT MARLRDEYYA HFNFKGCEIC RAGYTAGPQR LYRWNLRTGG GKVRRFSPKF
201: EEKCRRHHEE RMASRKMNKS KTKEG
101: GELARVFVHI ECETGVSRGY AFINLKKRVG IEAALSLNGS DLGGHKLLVT MARLRDEYYA HFNFKGCEIC RAGYTAGPQR LYRWNLRTGG GKVRRFSPKF
201: EEKCRRHHEE RMASRKMNKS KTKEG
001: MDRRLKKCST STDVESVHDV SKVTDPLQKA KRELDNVEIK EKQKKQKNQN ETSEKETKKF STVYEKFNDT IKELDRVSGT CPIRPAIPFT PPKEKVEPIY
101: HNECNFDDKA HLGVSDSALF VQGFDTSHPR HEIKTALWNH FSSCGKVYLI YVPIACSTGA SVGYAFIDMK NETKGLTLNG SHLGGRKIDV MFAIDREEFY
201: FSSNLKHCQR CRNYRPWLVL KAMSDACFEY HQRIKPRIVG TPHSKIGRFT AIIGRRSYS
101: HNECNFDDKA HLGVSDSALF VQGFDTSHPR HEIKTALWNH FSSCGKVYLI YVPIACSTGA SVGYAFIDMK NETKGLTLNG SHLGGRKIDV MFAIDREEFY
201: FSSNLKHCQR CRNYRPWLVL KAMSDACFEY HQRIKPRIVG TPHSKIGRFT AIIGRRSYS
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HQ94]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.