CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014162.1-P	Field mustard	nucleus	84.11	83.82
CDY60074	Canola	nucleus	50.43	66.36
CDY65178	Canola	nucleus	54.06	64.94
CDX93706	Canola	nucleus	54.23	62.67
CDY59893	Canola	nucleus	51.12	57.93
GSMUA_Achr10P...	Banana	nucleus	26.08	51.89
GSMUA_Achr11P...	Banana	nucleus	25.56	48.84
CDY16474	Canola	nucleus	39.03	46.69
CDX93704	Canola	nucleus	54.75	46.48
CDX92253	Canola	nucleus	20.55	42.2
CDX92252	Canola	nucleus	43.52	41.93
Os08t0192900-01	Rice	nucleus	40.93	41.43
CDX99340	Canola	nucleus	42.66	39.52
TraesCS7B01G183600.1	Wheat	nucleus	38.34	39.36
TraesCS7D01G289200.1	Wheat	nucleus	38.0	38.46
HORVU7Hr1G068630.2	Barley	nucleus	37.82	38.29
Solyc02g014310.2.1	Tomato	nucleus	39.72	36.45
PGSC0003DMT400003013	Potato	nucleus	38.86	35.94
TraesCS7A01G286200.1	Wheat	nucleus	36.79	35.03
EER94106	Sorghum	nucleus	38.34	33.43
EES14672	Sorghum	nucleus	36.61	32.77
Os04t0620700-01	Rice	nucleus	39.21	32.11
CDX91465	Canola	nucleus	9.84	30.81
TraesCS2D01G465200.1	Wheat	nucleus	38.17	30.23
TraesCS2B01G486000.4	Wheat	nucleus	37.82	30.04
Zm00001d032748_P001	Maize	nucleus	39.55	29.82
Zm00001d049399_P001	Maize	plasma membrane	35.23	29.14
CDX91456	Canola	mitochondrion	7.08	28.87
TraesCS2A01G464300.3	Wheat	nucleus	36.27	28.69
CDY20455	Canola	nucleus	13.64	26.16
CDX99339	Canola	nucleus	26.25	25.94
CDX91458	Canola	nucleus	10.02	25.66
CDX91450	Canola	nucleus	9.15	25.48
CDX91454	Canola	nucleus	9.67	24.89
CDY54454	Canola	nucleus	10.02	24.68
CDY09605	Canola	mitochondrion, plastid	8.12	22.93
CDY26273	Canola	nucleus	8.12	21.76
CDY70171	Canola	cytosol, nucleus, plastid	8.98	21.22
CDX90410	Canola	nucleus	7.77	21.13
CDX91457	Canola	mitochondrion	1.9	20.75
CDY09156	Canola	cytosol	10.71	20.0
CDX90296	Canola	nucleus	10.71	19.68
CDY12105	Canola	plastid	10.88	18.0
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	14.16	15.89

Protein Annotations

MapMan:17.1.1.1.1	Gene3D:3.30.70.330	GO:A0A078CML5	EnsemblPlants:CDX77274	ProteinID:CDX77274	ProteinID:CDX77274.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00127991001	InterPro:IPR000504	InterPro:IPR012677
InterPro:NUCL_RRM1	InterPro:NUCL_RRM2	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE4010	SEG:seg	:

Description

BnaC08g03190D

Coordinates

chrLK031810:-:669805..673155

Molecular Weight (calculated)

61054.9 Da

IEP (calculated)

4.773

GRAVY (calculated)

-1.108

Length

579 amino acids

Sequence
(BLAST)

001: MGKKSATKVE AAPVAIKATK PLKKGKREAE DDVDAKVNLK KQKKDVIAAV KKEKAVKKVP KKVESSSDSS DSSDSEEEVK AKKVPAKKVE SSSDSSDSSD
101: SEEEVKAKKV PAKKAPAKAD SSSEESSDDS SSDDEPVVAK KATNGKVAKK TKDDSSSEEE SSDDEEVAVT KKPAAAAKNG SVKAKAESSS EEEDSSDEES
201: SDEEPATKKP VAAKKPAAKA KDSSSSDDDD SSEDESEDEK PAAKKAAPAT KAASSSESSD EESEDEKPAP KKATTKAAKK DSSSDESESD ESESEDEEET
301: PKKKNADVEM VDAEEKQPKT PATPATGGPK TLFAGNLSFQ IERSDVENFF KEAGEVVDVR FATNKDDGSF RGFGHVEFAT SEDAQKALEL HGRALLGRDI
401: RLDLAAERGD RPAYNTPQSG GGNFRSGGGE GQKIFVKGFD SSLPEEDIRQ ALTQHFASCG EITRVSLPMD RETGASRGIA YIDFKEGAEK AYDLNGTELG
501: GWNIVVDEAK PRDSSGGGGG GGRFSGGGGG RFCSGRGRDS GRGRNGGGRF GRGRDNGGGR GFSRPSFTSS VNKKTTFDD

Best Arabidopsis Sequence Match ( AT3G18610.1 )
(BLAST)

001: MGKSSKKSVT EVETPASMTK PLKKGKRDAE EDLDMQVTKK QKKELIDVVQ KEKAEKTVPK KVESSSSDAS DSDEEEKTKE TPSKLKDESS SEEEDDSSSD
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPVKKQP AVLEKAKIES SSSDDDSSSD EETVPMKKQT
201: AVLEKAKAES SSSDDGSSSD EEPTPAKKEP IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS
301: EEDSDEEESD DEKPPTKKAK VSSKTSKQES SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI
401: ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR
501: SHFSKCGEVT RVHVPTDRET GASRGFAYID LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS
601: DRGAPRGRFS TRGRGPSKPS VMESSKGTKT VFNDEE

Arabidopsis Description

NUCL2Nucleolin 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEP5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.