CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92252	Canola	nucleus	75.52	78.54
CDX92253	Canola	nucleus	22.72	50.35
CDX93706	Canola	nucleus	35.04	43.71
CDY60074	Canola	nucleus	30.72	43.64
AT3G18610.1	Thale cress	nucleus	44.0	43.24
CDX77274	Canola	nucleus	39.52	42.66
CDY65178	Canola	nucleus	32.48	42.12
GSMUA_Achr10P...	Banana	nucleus	19.36	41.58
CDY59893	Canola	nucleus	33.92	41.49
GSMUA_Achr11P...	Banana	nucleus	19.36	39.93
TraesCS7B01G183600.1	Wheat	nucleus	30.56	33.87
Os08t0192900-01	Rice	nucleus	30.88	33.74
HORVU7Hr1G068630.2	Barley	nucleus	30.4	33.22
CDY16474	Canola	nucleus	25.6	33.06
TraesCS7D01G289200.1	Wheat	nucleus	30.08	32.87
CDX93704	Canola	nucleus	35.84	32.84
Solyc02g014310.2.1	Tomato	nucleus	33.12	32.81
PGSC0003DMT400003013	Potato	nucleus	32.8	32.75
CDX99339	Canola	nucleus	30.24	32.25
TraesCS7A01G286200.1	Wheat	nucleus	29.44	30.26
Os04t0620700-01	Rice	nucleus	33.44	29.56
EER94106	Sorghum	nucleus	31.2	29.37
CDX91465	Canola	nucleus	8.64	29.19
EES14672	Sorghum	nucleus	29.76	28.75
TraesCS2B01G486000.4	Wheat	nucleus	33.12	28.4
Zm00001d049399_P001	Maize	plasma membrane	31.68	28.29
TraesCS2D01G465200.1	Wheat	nucleus	32.32	27.63
Zm00001d032748_P001	Maize	nucleus	32.96	26.82
TraesCS2A01G464300.3	Wheat	nucleus	31.04	26.5
CDX91456	Canola	mitochondrion	5.92	26.06
CDX91458	Canola	nucleus	9.12	25.22
CDY20455	Canola	nucleus	12.0	24.83
CDY54454	Canola	nucleus	8.96	23.83
CDX91454	Canola	nucleus	8.0	22.22
CDX91450	Canola	nucleus	7.2	21.63
CDY26273	Canola	nucleus	6.88	19.91
CDX91457	Canola	mitochondrion	1.6	18.87
CDY09156	Canola	cytosol	9.28	18.71
CDX90410	Canola	nucleus	6.24	18.31
CDY09605	Canola	mitochondrion, plastid	5.92	18.05
CDY70171	Canola	cytosol, nucleus, plastid	6.56	16.73
CDY12105	Canola	plastid	8.64	15.43
CDX90296	Canola	nucleus	7.68	15.24
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	11.68	14.15

Protein Annotations

MapMan:17.1.1.1.1	Gene3D:3.30.70.330	GO:A0A078EB64	EnsemblPlants:CDX99340	ProteinID:CDX99340	ProteinID:CDX99340.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00107636001	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EDB297	SEG:seg	:	:

Description

BnaC05g34550D

Coordinates

chrLK031909:+:1238132..1242358

Molecular Weight (calculated)

67204.0 Da

IEP (calculated)

5.570

GRAVY (calculated)

-1.134

Length

625 amino acids

Sequence
(BLAST)

001: MVKSKKESVK KVEAAPVSTT KPSKKSKRDA EVDLDIKKKQ KKEKELVQAE KKAPPPKKVE TSSSSSDSED EVRTKKAIAK KPLSKKDDSS SSSDEEAVTV
101: KKKPATLKKA KAESSSSDDS SSSSDEEAAP PKKQPAVVTK AKAESSSSED DESSSDEVVP AKKQPAVVKK AKVESSSSED ESSSDEEPAV VKKDSSSEEE
201: SSSDEESVPA KKQPTTTLKA AKAESSSSSE DESSSDEESA PPKKQPTVVK SVKPAAKDSS SSEDEDSEDE KKKEPATKKL PAAAKTKSDS SEEDSDDEES
301: DDEKPPTKKA KVSPTKTSKQ ESSSGESSEE ESEDEKVAPK KKDTDVEMAE AEQKSEAKQP KTPTTQRPTT QARGGSTTLF AGNLPFQIEK SDVENFFKEV
401: GGIVDVRFAS HPDGRLKGYG HFEFASAEAA LKALKLMNGK PLLGRTIRLS DANAKPAPRS SNADGNFQSN RKGEGSQVKT IFVSKFDKSV AERDMICALR
501: EHFSDCGEIT RISLPCDQET GATRGMAYLD FINEDGFNKA LELNGSELGG WNILVLEGKP RGWNSDGNND GDRFTATRPG RRPPGRGIPG RSRPGRAPPG
601: RGDRRTPSKP SVFASAEGKK IVFDD

Best Arabidopsis Sequence Match ( AT3G18610.1 )
(BLAST)

001: MGKSSKKSVT EVETPASMTK PLKKGKRDAE EDLDMQVTKK QKKELIDVVQ KEKAEKTVPK KVESSSSDAS DSDEEEKTKE TPSKLKDESS SEEEDDSSSD
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPVKKQP AVLEKAKIES SSSDDDSSSD EETVPMKKQT
201: AVLEKAKAES SSSDDGSSSD EEPTPAKKEP IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS
301: EEDSDEEESD DEKPPTKKAK VSSKTSKQES SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI
401: ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR
501: SHFSKCGEVT RVHVPTDRET GASRGFAYID LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS
601: DRGAPRGRFS TRGRGPSKPS VMESSKGTKT VFNDEE

Arabidopsis Description

NUCL2Nucleolin 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEP5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.