Factsheet for PGSC0003DMT400003013

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g014310.2.1	Tomato	nucleus	76.04	75.44
GSMUA_Achr10P...	Banana	nucleus	26.04	56.01
GSMUA_Achr11P...	Banana	nucleus	26.04	53.8
VIT_05s0020g00100.t01	Wine grape	mitochondrion	11.02	51.88
CDY60074	Canola	nucleus	31.63	45.0
Bra032269.1-P	Field mustard	nucleus	31.63	45.0
CDY65178	Canola	nucleus	33.23	43.15
VIT_01s0011g02180.t01	Wine grape	nucleus	48.88	43.1
AT1G48920.1	Thale cress	nucleus	38.34	43.09
CDY59893	Canola	nucleus	34.66	42.47
Bra018764.1-P	Field mustard	nucleus	33.55	42.0
CDX93706	Canola	nucleus	33.23	41.52
Bra022338.1-P	Field mustard	nucleus	17.09	41.0
TraesCS7D01G289200.1	Wheat	nucleus	37.38	40.91
Os08t0192900-01	Rice	nucleus	36.1	39.51
Bra014162.1-P	Field mustard	nucleus	36.42	39.24
HORVU7Hr1G068630.2	Barley	nucleus	35.78	39.16
CDX92253	Canola	nucleus	17.57	39.01
CDX77274	Canola	nucleus	35.94	38.86
TraesCS7B01G183600.1	Wheat	nucleus	34.66	38.48
TraesCS7A01G286200.1	Wheat	nucleus	35.46	36.51
Os04t0620700-01	Rice	nucleus	41.21	36.49
EER94106	Sorghum	nucleus	38.66	36.45
EES14672	Sorghum	nucleus	36.42	35.24
KRH29160	Soybean	nucleus	42.01	35.16
Zm00001d049399_P001	Maize	plasma membrane	38.5	34.43
CDX92252	Canola	nucleus	32.43	33.78
KRH24189	Soybean	nucleus	40.1	33.74
AT3G18610.1	Thale cress	nucleus	34.19	33.65
Bra022337.1-P	Field mustard	nucleus	32.11	33.61
Bra018762.1-P	Field mustard	nucleus	34.5	33.49
TraesCS2A01G464300.3	Wheat	nucleus	38.66	33.06
TraesCS2B01G486000.4	Wheat	nucleus	38.5	33.06
TraesCS2D01G465200.1	Wheat	nucleus	38.5	32.97
CDX99340	Canola	nucleus	32.75	32.8
CDX93704	Canola	nucleus	34.34	31.52
CDY16474	Canola	nucleus	23.96	30.99
Zm00001d032748_P001	Maize	nucleus	38.02	30.99
CDY20455	Canola	nucleus	12.14	25.17
CDX99339	Canola	nucleus	20.93	22.35
KRH40855	Soybean	nucleus	23.16	21.14
KRG89142	Soybean	nucleus	23.16	21.01
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	11.82	14.34

Protein Annotations

EntrezGene:102599812	MapMan:17.1.1.1.1	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0ZL17	InterPro:NUCL_RRM1
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400001191	PGSC:PGSC0003DMG400001191	EnsemblPlants:PGSC0003DMT400003013	PFscan:PS50102
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000296668F	RefSeq:XP_006367329.1
SEG:seg	:	:	:	:	:

Description

Nucleolin [Source:PGSC_GENE;Acc:PGSC0003DMG400001191]

Coordinates

chr2:-:9295784..9300472

Molecular Weight (calculated)

65389.8 Da

IEP (calculated)

5.033

GRAVY (calculated)

-1.103

Length

626 amino acids

Sequence
(BLAST)

001: MGKSIKKSAT KVDAAVVAPT KPMKKGKREA EDEIAKLVSA KKQKKDVAVA QAVDKKKTDV KTQKKNKQES SSSDDSSSES EDEKPTKAVV PPKKVAPAKK
101: GKVASSSDDS DSSDEDEAPA KKVVAASTKN GVAAKKKDES SDDSDDSSSE EDVPAPKKPP TNGAKKDESS DDSDDSSSED EAVVKKAPAV VKKAPAAASK
201: KEESSDDSSS DDDEPPSKVA AQPKKALQAV KKASDSSDDS DSDSDSDKGK AATESKKAAT VSKKVASSDD DSEDDSSEES DEEPQKKKSK ASSTPVVSKT
301: PEKSSSEESS DSEDSSEDEE DDKPSKTPKK GADVEMVDAP SAKAQQTPIT PKAQTPGGSK TLFVGNLSYS VEQADVENFF KDAGEVQEVR FSTHEDGSFK
401: GYGHVEFVTA EAAHKALELN GHDLLGRDVR LDLARERGEY TPRSGRDENS FQKPAARSDG TTIFVRGFDK NEAEDQIRSS LEEHFASCGK IFKTRIPTDP
501: EGYIKGMAYI EFANGDADAL NKALELDGSE VGGFSLNVQE AKPRGDSSGG GGRGFGGRSG GRGGGRDSGG RFGGRGGGGR FGGGGRFGGG GRGGGGGRFG
601: GGGRGRGTPN KPSFTPSGKK TTFSDE

Best Arabidopsis Sequence Match ( AT3G18610.1 )
(BLAST)

001: MGKSSKKSVT EVETPASMTK PLKKGKRDAE EDLDMQVTKK QKKELIDVVQ KEKAEKTVPK KVESSSSDAS DSDEEEKTKE TPSKLKDESS SEEEDDSSSD
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPVKKQP AVLEKAKIES SSSDDDSSSD EETVPMKKQT
201: AVLEKAKAES SSSDDGSSSD EEPTPAKKEP IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS
301: EEDSDEEESD DEKPPTKKAK VSSKTSKQES SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI
401: ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR
501: SHFSKCGEVT RVHVPTDRET GASRGFAYID LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS
601: DRGAPRGRFS TRGRGPSKPS VMESSKGTKT VFNDEE

Arabidopsis Description

NUCL2Nucleolin 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEP5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.