Factsheet for Bra018762.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93704	Canola	nucleus	93.33	88.27
Bra018764.1-P	Field mustard	nucleus	62.33	80.4
Bra032269.1-P	Field mustard	nucleus	44.19	64.77
Bra014162.1-P	Field mustard	nucleus	48.06	53.36
AT1G48920.1	Thale cress	nucleus	43.41	50.27
GSMUA_Achr10P...	Banana	nucleus	20.31	45.02
GSMUA_Achr11P...	Banana	nucleus	21.09	44.88
VIT_05s0020g00100.t01	Wine grape	mitochondrion	9.15	44.36
Bra022338.1-P	Field mustard	nucleus	17.67	43.68
Bra022337.1-P	Field mustard	nucleus	36.12	38.96
Os08t0192900-01	Rice	nucleus	34.26	38.64
HORVU7Hr1G068630.2	Barley	nucleus	33.95	38.29
TraesCS7B01G183600.1	Wheat	nucleus	33.33	38.12
TraesCS7D01G289200.1	Wheat	nucleus	33.33	37.59
PGSC0003DMT400003013	Potato	nucleus	33.49	34.5
Solyc02g014310.2.1	Tomato	nucleus	33.64	34.39
TraesCS7A01G286200.1	Wheat	nucleus	31.01	32.89
Os04t0620700-01	Rice	nucleus	35.81	32.67
VIT_01s0011g02180.t01	Wine grape	nucleus	34.42	31.27
EER94106	Sorghum	nucleus	31.94	31.02
EES14672	Sorghum	nucleus	31.01	30.91
KRH24189	Soybean	nucleus	35.19	30.51
KRH29160	Soybean	nucleus	34.73	29.95
TraesCS2B01G486000.4	Wheat	nucleus	33.33	29.49
TraesCS2D01G465200.1	Wheat	nucleus	33.02	29.14
Zm00001d049399_P001	Maize	plasma membrane	30.39	28.0
Zm00001d032748_P001	Maize	nucleus	33.33	27.99
TraesCS2A01G464300.3	Wheat	nucleus	31.32	27.6
Bra005114.1-P	Field mustard	nucleus	8.06	22.22
Bra032377.1-P	Field mustard	nucleus, plastid	5.12	21.02
Bra012610.1-P	Field mustard	nucleus	6.2	20.83
Bra020207.1-P	Field mustard	nucleus	8.53	19.71
KRH40855	Soybean	nucleus	20.93	19.68
KRG89142	Soybean	nucleus	20.16	18.84
Bra010724.1-P	Field mustard	nucleus	14.26	10.67

Protein Annotations

MapMan:17.1.1.1.1	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra018762	EnsemblPlants:Bra018762.1	EnsemblPlants:Bra018762.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4DQG9	InterPro:NUCL_RRM1	InterPro:NUCL_RRM2	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR44047	PANTHER:PTHR44047:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI000253EC58	SEG:seg	:	:	:	:

Description

AT1G48920 (E=4e-079) ATNUC-L1, PARL1 | ATNUC-L1; nucleic acid binding / nucleotide binding

Coordinates

chrA06:-:2118614..2122274

Molecular Weight (calculated)

68590.0 Da

IEP (calculated)

4.593

GRAVY (calculated)

-1.228

Length

645 amino acids

Sequence
(BLAST)

001: MGKKSATKVE AAPAAIKATK PLKKGKREPE DDLETKVNLK KQKKDVVAAV KKEKAEKKVP KKVESSDESD SSESEEEKKA KKVPAKKAPV KAASSSDDDD
101: SSSDDEEVAV TKKPAAAKPA AKDSSSSEED SEDESEDEKV KPVAKKAAPV ATKAASSSES SEEDSDEESE DEKPAPKAKE GTKKAEKDSS SDDSGSEESE
201: SEDAKETPKK KSSDVEMVDA EKQQAKKVPA KKAPVKAASS SDDDDSSSDD EPTPKKATNG TVAKKAKDES SSEEESSDEE EVAVTKKPAA AKPAAKDSSS
301: SEEDSEDESE DEKVKPVAKK AAPVATKAAS SSESSEEDSD EESEDEKPAP KAKEGTKKAE KDSSSDDSGS EESESEDEKE TPKKKSSDVE MVDAEKQQPK
401: TPSTPATGGT KTLFVGNLPF QVERSDVEEF FKEAGQVVDV RFATNRDDGS FRGFGHVEFA SAGEAQKALE FHGRPLLGRE LRLDVAQERG ERPAYTPQSG
501: TGNNSRSGGG GGQEVFVKGF DSSLAPNDIK SALTEHFASC GEITRVSVPV DRETGGSRGI AYVEFKEGTE KAFELNGSDM GGWNLVVDQP RPKENNSGGG
601: FNSGRSNSFS GGRDNFRGRG RGGRDNGRGR PSFTSQAKKT VFSDE

Best Arabidopsis Sequence Match ( AT1G48920.1 )
(BLAST)

001: MGKSKSATKV VAEIKATKPL KKGKREPEDD IDTKVSLKKQ KKDVIAAVQK EKAVKKVPKK VESSDDSDSE SEEEEKAKKV PAKKAASSSD ESSDDSSSDD
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE

Arabidopsis Description

NUCL1Nucleolin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.