Factsheet for Bra014162.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77274	Canola	nucleus	83.82	84.11
Bra032269.1-P	Field mustard	nucleus	49.57	65.45
Bra018764.1-P	Field mustard	nucleus	51.98	60.4
GSMUA_Achr10P...	Banana	nucleus	25.65	51.2
GSMUA_Achr11P...	Banana	nucleus	25.3	48.51
Bra018762.1-P	Field mustard	nucleus	53.36	48.06
VIT_05s0020g00100.t01	Wine grape	mitochondrion	10.84	47.37
Bra022338.1-P	Field mustard	nucleus	19.97	44.44
Bra022337.1-P	Field mustard	nucleus	40.45	39.3
Os08t0192900-01	Rice	nucleus	38.38	38.99
TraesCS7B01G183600.1	Wheat	nucleus	37.35	38.48
TraesCS7D01G289200.1	Wheat	nucleus	37.69	38.29
HORVU7Hr1G068630.2	Barley	nucleus	37.52	38.11
PGSC0003DMT400003013	Potato	nucleus	39.24	36.42
Solyc02g014310.2.1	Tomato	nucleus	38.9	35.82
TraesCS7A01G286200.1	Wheat	nucleus	36.49	34.87
EES14672	Sorghum	nucleus	37.52	33.69
VIT_01s0011g02180.t01	Wine grape	nucleus	40.79	33.38
EER94106	Sorghum	nucleus	37.18	32.53
Os04t0620700-01	Rice	nucleus	39.24	32.25
TraesCS2D01G465200.1	Wheat	nucleus	39.07	31.05
KRH29160	Soybean	nucleus	39.93	31.02
TraesCS2B01G486000.4	Wheat	nucleus	38.04	30.32
KRH24189	Soybean	nucleus	38.73	30.24
Zm00001d032748_P001	Maize	nucleus	39.59	29.95
TraesCS2A01G464300.3	Wheat	nucleus	37.35	29.64
Zm00001d049399_P001	Maize	plasma membrane	35.63	29.57
Bra005114.1-P	Field mustard	nucleus	10.15	25.21
Bra020207.1-P	Field mustard	nucleus	11.36	23.66
Bra012610.1-P	Field mustard	nucleus	7.57	22.92
KRH40855	Soybean	nucleus	25.13	21.28
KRG89142	Soybean	nucleus	24.27	20.43
Bra032377.1-P	Field mustard	nucleus, plastid	5.51	20.38
Bra010724.1-P	Field mustard	nucleus	16.52	11.14

Protein Annotations

EnsemblPlants:Bra014162.1	EnsemblPlants:Bra014162.1-P	EnsemblPlantsGene:Bra014162	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:NUCL_RRM1	InterPro:NUCL_RRM2
InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000254654B	UniProt:M4DCE8	MapMan:17.1.1.1.1	:

Description

AT1G48920 (E=9e-064) ATNUC-L1, PARL1 | ATNUC-L1; nucleic acid binding / nucleotide binding

Coordinates

chrA08:-:2897104..2909136

Molecular Weight (calculated)

60917.6 Da

IEP (calculated)

4.711

GRAVY (calculated)

-1.098

Length

581 amino acids

Sequence
(BLAST)

001: MGKKSATKVE AAPVAIKATK PLKKGKREAE DDVDTKVSLK KQKKDVIAAV KKEKAVKKVP KKVESSSESS DSEEEAKKVP AKKVESSSDS SSESSDSEEE
101: VKAKKVPAKK APAKADSSSE ESSDDSSSDD EPVVAKKATN GKVAKKTKDD SSSEEESSDD KPAAAAKNGS VKAKSESSSE EEDSSDEESS DEEPATKKPV
201: AAKKPAAKAK DSSSSDDDDS SEDESEDEKP AAKKAAPATK AASSSESSDE DSDEESEDEK PAPKKAITKA AKKDSSSGES DSDESESEDE KETPKKKNAD
301: VEMVDAEPQQ PKTPATPATG GPKTLFAGNL SFQIERSDVE TFFKEAGEVV DVRFATNKDD GSFRGFGHVE FASSEDAQKA LELNGRALLG RDIRLDMAAE
401: RGDRPAYNTP QSGGGNFRSG GGGGEGQKIF VKGFDSSLPE EDIRQALTQH FASCGEITRV SIPMDRETGA SRGIAYIDFK EGAEKAYDLN GTELGGWNIV
501: VDEAKPRDSS GGGGFSGGGG GRFSGGGGGR FGSGRGRDSG RGRFGSGRNG GGRFGRDNGG GRGFSEPSFT SSVNKKTTFD D

Best Arabidopsis Sequence Match ( AT1G48920.1 )
(BLAST)

001: MGKSKSATKV VAEIKATKPL KKGKREPEDD IDTKVSLKKQ KKDVIAAVQK EKAVKKVPKK VESSDDSDSE SEEEEKAKKV PAKKAASSSD ESSDDSSSDD
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE

Arabidopsis Description

NUCL1Nucleolin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.