Factsheet for Bra018764.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93706	Canola	nucleus	95.8	95.61
Bra032269.1-P	Field mustard	nucleus	56.6	64.32
Bra018762.1-P	Field mustard	nucleus	80.4	62.33
AT1G48920.1	Thale cress	nucleus	58.0	52.06
Bra014162.1-P	Field mustard	nucleus	60.4	51.98
GSMUA_Achr11P...	Banana	nucleus	27.4	45.21
VIT_05s0020g00100.t01	Wine grape	mitochondrion	12.0	45.11
GSMUA_Achr10P...	Banana	nucleus	26.2	45.02
Bra022338.1-P	Field mustard	nucleus	22.6	43.3
Os08t0192900-01	Rice	nucleus	43.0	37.59
TraesCS7B01G183600.1	Wheat	nucleus	41.8	37.06
TraesCS7D01G289200.1	Wheat	nucleus	42.0	36.71
HORVU7Hr1G068630.2	Barley	nucleus	42.0	36.71
Bra022337.1-P	Field mustard	nucleus	43.4	36.29
Solyc02g014310.2.1	Tomato	nucleus	43.2	34.23
PGSC0003DMT400003013	Potato	nucleus	42.0	33.55
TraesCS7A01G286200.1	Wheat	nucleus	39.2	32.24
EER94106	Sorghum	nucleus	40.8	30.72
Os04t0620700-01	Rice	nucleus	43.2	30.55
EES14672	Sorghum	nucleus	39.0	30.14
KRH24189	Soybean	nucleus	44.8	30.11
KRH29160	Soybean	nucleus	45.0	30.08
VIT_01s0011g02180.t01	Wine grape	nucleus	40.8	28.73
TraesCS2D01G465200.1	Wheat	nucleus	41.4	28.32
TraesCS2B01G486000.4	Wheat	nucleus	41.2	28.26
Zm00001d032748_P001	Maize	nucleus	41.8	27.21
TraesCS2A01G464300.3	Wheat	nucleus	39.6	27.05
Zm00001d049399_P001	Maize	plasma membrane	36.6	26.14
Bra005114.1-P	Field mustard	nucleus	10.6	22.65
Bra012610.1-P	Field mustard	nucleus	8.0	20.83
KRH40855	Soybean	nucleus	27.6	20.12
Bra020207.1-P	Field mustard	nucleus	11.2	20.07
KRG89142	Soybean	nucleus	26.8	19.42
Bra032377.1-P	Field mustard	nucleus, plastid	6.0	19.11
Bra010724.1-P	Field mustard	nucleus	17.4	10.09

Protein Annotations

MapMan:17.1.1.1.1	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra018764	EnsemblPlants:Bra018764.1	EnsemblPlants:Bra018764.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4DQH1	InterPro:NUCL_RRM1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44047
PANTHER:PTHR44047:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000253EC56
SEG:seg	:	:	:	:	:

Description

AT1G48920 (E=5e-080) ATNUC-L1, PARL1 | ATNUC-L1; nucleic acid binding / nucleotide binding

Coordinates

chrA06:-:2107485..2110262

Molecular Weight (calculated)

53354.3 Da

IEP (calculated)

4.764

GRAVY (calculated)

-1.141

Length

500 amino acids

Sequence
(BLAST)

001: MGKKSATKVE AAPAAIKATK PLKKGKREPE DDLETKVNLK KQKKDVVAAV KKEKAEKKVP KKVESSDESD SSDSEEEDKA KKVPAKKAPV KAASSSDDDD
101: SSSDDEPAPK KATNGTVAKK ANDESSSEEE SSDEEEVAVT KKPAAAKPAA KDSSSSEEDS EDESEDEKVK PVAKKAAPVA TKAASSSESS EEDSDEESED
201: EKPAPKAKEG TKKAEKDSSS DDSGSEESES EDEKETPKKK SSDVEMVDAE KQQPKTPSTP ATGGSKTLFV ANLPFQVERS DVEEFFKEAG QVVDVRFATN
301: RDDGSFRGFG HVEFASAGEA QKALEFHGRP LLGRELRLDV AQERGERPAY TPQSGTGNNS RSGGGGGQEV FVKGFDSSLA PNDIKSALTE HFASCGEITR
401: VSVPVDRETG GSRGIAYVEF KEGTEKAFEL NGSDMGGWNL VVDQPRPKEN NSGGGFNSGR SNSFSGGRDN FRGRGRGGRD NGRGRPSFTS QAKKTVFSDE

Best Arabidopsis Sequence Match ( AT1G48920.1 )
(BLAST)

001: MGKSKSATKV VAEIKATKPL KKGKREPEDD IDTKVSLKKQ KKDVIAAVQK EKAVKKVPKK VESSDDSDSE SEEEEKAKKV PAKKAASSSD ESSDDSSSDD
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE

Arabidopsis Description

NUCL1Nucleolin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.