Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54454 | Canola | nucleus | 72.65 | 72.34 |
| Bra012610.1-P | Field mustard | nucleus | 24.36 | 29.69 |
| OQU82679 | Sorghum | nucleus | 18.38 | 25.75 |
| Bra020207.1-P | Field mustard | nucleus | 29.06 | 24.37 |
| Bra032377.1-P | Field mustard | nucleus, plastid | 13.68 | 20.38 |
| Bra022338.1-P | Field mustard | nucleus | 20.94 | 18.77 |
| Bra032269.1-P | Field mustard | nucleus | 23.93 | 12.73 |
| Bra018764.1-P | Field mustard | nucleus | 22.65 | 10.6 |
| Bra014162.1-P | Field mustard | nucleus | 25.21 | 10.15 |
| Zm00001d018553_P001 | Maize | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 12.82 | 9.97 |
| Bra022337.1-P | Field mustard | nucleus | 24.79 | 9.7 |
| Bra018762.1-P | Field mustard | nucleus | 22.22 | 8.06 |
| Bra010724.1-P | Field mustard | nucleus | 29.06 | 7.89 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EnsemblPlantsGene:Bra005114 | EnsemblPlants:Bra005114.1 | EnsemblPlants:Bra005114.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M4CLM7 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR43987 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | TMHMM:TMhelix |
| UniParc:UPI00025476BB | SEG:seg | : | : | : | : |
Description
AT1G73490 (E=2e-019) | RNA recognition motif (RRM)-containing protein
Coordinates
chrA05:-:3496386..3497449
Molecular Weight (calculated)
26541.7 Da
IEP (calculated)
9.382
GRAVY (calculated)
-0.481
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MDESKLKRCS TSSTHAEASD EAIDPLQKAY KREFDDWETE VNNRKKQKQA EETTEKKKKC CFGTKDAKGN NEHTIFVTGF DNSGSRDEIR SALAKHFSSC
101: GELTRVFVHI ECETGVSRGY AFINLKKRVG IEAALSLNGS DLGGHKLLVT MARLRDEYYA HFNFNGCEIC RASYAAGRQR LYRWNLRTGG GKVRRMYVKL
201: LIVTIYSCYR ICLVFDFVVL LQVSTISRKG SSSL
101: GELTRVFVHI ECETGVSRGY AFINLKKRVG IEAALSLNGS DLGGHKLLVT MARLRDEYYA HFNFNGCEIC RASYAAGRQR LYRWNLRTGG GKVRRMYVKL
201: LIVTIYSCYR ICLVFDFVVL LQVSTISRKG SSSL
001: MDRRLKKCST STDVESVHDV SKVTDPLQKA KRELDNVEIK EKQKKQKNQN ETSEKETKKF STVYEKFNDT IKELDRVSGT CPIRPAIPFT PPKEKVEPIY
101: HNECNFDDKA HLGVSDSALF VQGFDTSHPR HEIKTALWNH FSSCGKVYLI YVPIACSTGA SVGYAFIDMK NETKGLTLNG SHLGGRKIDV MFAIDREEFY
201: FSSNLKHCQR CRNYRPWLVL KAMSDACFEY HQRIKPRIVG TPHSKIGRFT AIIGRRSYS
101: HNECNFDDKA HLGVSDSALF VQGFDTSHPR HEIKTALWNH FSSCGKVYLI YVPIACSTGA SVGYAFIDMK NETKGLTLNG SHLGGRKIDV MFAIDREEFY
201: FSSNLKHCQR CRNYRPWLVL KAMSDACFEY HQRIKPRIVG TPHSKIGRFT AIIGRRSYS
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HQ94]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.