Factsheet for Bra032269.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60074	Canola	nucleus	100.0	100.0
Bra018764.1-P	Field mustard	nucleus	64.32	56.6
Bra014162.1-P	Field mustard	nucleus	65.45	49.57
GSMUA_Achr10P...	Banana	nucleus	32.73	49.48
GSMUA_Achr11P...	Banana	nucleus	33.86	49.17
VIT_05s0020g00100.t01	Wine grape	mitochondrion	14.77	48.87
AT1G48920.1	Thale cress	nucleus	61.14	48.29
Bra022338.1-P	Field mustard	nucleus	26.59	44.83
Bra018762.1-P	Field mustard	nucleus	64.77	44.19
TraesCS7B01G183600.1	Wheat	nucleus	45.23	35.28
Os08t0192900-01	Rice	nucleus	45.0	34.62
TraesCS7D01G289200.1	Wheat	nucleus	44.32	34.09
HORVU7Hr1G068630.2	Barley	nucleus	43.18	33.22
Solyc02g014310.2.1	Tomato	nucleus	46.36	32.33
PGSC0003DMT400003013	Potato	nucleus	45.0	31.63
Bra022337.1-P	Field mustard	nucleus	42.5	31.27
TraesCS7A01G286200.1	Wheat	nucleus	42.95	31.09
EES14672	Sorghum	nucleus	42.27	28.75
VIT_01s0011g02180.t01	Wine grape	nucleus	45.91	28.45
Os04t0620700-01	Rice	nucleus	45.0	28.01
EER94106	Sorghum	nucleus	41.59	27.56
TraesCS2D01G465200.1	Wheat	nucleus	45.45	27.36
KRH24189	Soybean	nucleus	45.23	26.75
TraesCS2B01G486000.4	Wheat	nucleus	43.64	26.34
TraesCS2A01G464300.3	Wheat	nucleus	43.64	26.23
KRH29160	Soybean	nucleus	44.32	26.07
Zm00001d049399_P001	Maize	plasma membrane	40.23	25.29
Zm00001d032748_P001	Maize	nucleus	43.41	24.87
Bra005114.1-P	Field mustard	nucleus	12.73	23.93
Bra012610.1-P	Field mustard	nucleus	9.77	22.4
Bra032377.1-P	Field mustard	nucleus, plastid	7.73	21.66
Bra020207.1-P	Field mustard	nucleus	12.95	20.43
KRH40855	Soybean	nucleus	31.36	20.12
KRG89142	Soybean	nucleus	30.45	19.42
Bra010724.1-P	Field mustard	nucleus	18.64	9.51

Protein Annotations

MapMan:17.1.1.1.1	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra032269	EnsemblPlants:Bra032269.1	EnsemblPlants:Bra032269.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4ETY7	InterPro:NUCL_RRM1	InterPro:NUCL_RRM2	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR44047	PANTHER:PTHR44047:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0002547C9F	SEG:seg	:	:	:	:

Description

AT1G48920 (E=3e-071) ATNUC-L1, PARL1 | ATNUC-L1; nucleic acid binding / nucleotide binding

Coordinates

chrA05:-:12134935..12137555

Molecular Weight (calculated)

46580.8 Da

IEP (calculated)

4.767

GRAVY (calculated)

-1.038

Length

440 amino acids

Sequence
(BLAST)

001: MGKKSATKVD AAPAAIKATK PLKKGKRDPE DDLDTKVNLK KQKKDVIAAV QKEKAEKKVP KKVENSDSSD IEEEESSDEE EVAAVAKNGS VKAKAESSSE
101: EEDSSDESDD ESEKPAAKKA APATTKADSS EEDSDEESED EKPAAKKDSS SDDSDSDESE SEDEKETPKK KNSDVEMVNA EQKQPKTPST PATGGSKTLF
201: VANLSFNVER SDVENFFKDV GEVVDVRFAM SKDDGSFRGF GHVEFATAEQ AQKALELHGT SMLGRDIRLD VAQERGERPA YTPQSGAGGN FRSGGGGGQS
301: VFVKGFDSSL PEEDIKSALS AHFASCGEIT RVSVPCDRET GASKGIAYLD FKDGTDKAFE LNGSDMGGWS IVVDQPREKS SGGFGGGGRS GGGRFGSGRG
401: GGRGRDGGRG RGRGGGRGRD GGRGFNKPSF SGKKTTFNDY

Best Arabidopsis Sequence Match ( AT3G18610.1 )
(BLAST)

001: MGKSSKKSVT EVETPASMTK PLKKGKRDAE EDLDMQVTKK QKKELIDVVQ KEKAEKTVPK KVESSSSDAS DSDEEEKTKE TPSKLKDESS SEEEDDSSSD
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPVKKQP AVLEKAKIES SSSDDDSSSD EETVPMKKQT
201: AVLEKAKAES SSSDDGSSSD EEPTPAKKEP IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS
301: EEDSDEEESD DEKPPTKKAK VSSKTSKQES SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI
401: ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR
501: SHFSKCGEVT RVHVPTDRET GASRGFAYID LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS
601: DRGAPRGRFS TRGRGPSKPS VMESSKGTKT VFNDEE

Arabidopsis Description

NUCL2Nucleolin 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEP5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.