Factsheet for Bra010724.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90296	Canola	nucleus	16.82	46.03
CDY12105	Canola	plastid	17.05	42.0
Bra012610.1-P	Field mustard	nucleus	6.84	30.73
Bra005114.1-P	Field mustard	nucleus	7.89	29.06
Bra020207.1-P	Field mustard	nucleus	8.7	26.88
AT1G73490.2	Thale cress	nucleus	7.66	25.38
Bra032377.1-P	Field mustard	nucleus, plastid	4.18	22.93
OQU82679	Sorghum	nucleus	4.41	22.75
Bra022338.1-P	Field mustard	nucleus	6.73	22.22
Bra032269.1-P	Field mustard	nucleus	9.51	18.64
Bra018764.1-P	Field mustard	nucleus	10.09	17.4
Bra022337.1-P	Field mustard	nucleus	11.48	16.56
Bra014162.1-P	Field mustard	nucleus	11.14	16.52
Zm00001d018553_P001	Maize	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	5.34	15.28
Bra018762.1-P	Field mustard	nucleus	10.67	14.26

Protein Annotations

Gene3D:3.30.70.330	Gene3D:3.90.70.10	MapMan:35.2	EnsemblPlantsGene:Bra010724	EnsemblPlants:Bra010724.1	EnsemblPlants:Bra010724.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008234	GO:GO:0016787	GO:GO:0019538
InterPro:IPR000504	InterPro:IPR012677	UniProt:M4D2M1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00112
PFscan:PS50102	PANTHER:PTHR43987	PANTHER:PTHR43987:SF2	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C1A_C	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54001	SUPFAM:SSF54928	UniParc:UPI0002546B4B	SEG:seg

Description

AT1G73490 (E=1e-024) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA08:-:16128398..16134679

Molecular Weight (calculated)

97528.4 Da

IEP (calculated)

9.235

GRAVY (calculated)

-0.891

Length

862 amino acids

Sequence
(BLAST)

001: MEESKRKSRE GGTTPDPERV GSDDPDVKPK KKKNKTAAEP SKADPDDPED KPKKRDKGKS PKKKKSKTAV EPSKTHPDDP EDKPKKHDKG KSPKKKKSKT
101: AVEPSKTHPD DPEDKPKKHD KGKSPKKKKS KTAAEPSKTD PDDPEPPKTG ADDPEHHKGK RQKKRKEIET TSDPSEIECD VKKLKVDYSP PKSSSSESEY
201: EGICEPMQVG AVNLPEDVTE PELMAFFNGK PVHVVIRRFE NEYSRSVIVF GSVADTKEAL KLCGKKMRGI PIYIKPNGNS REIVLASGFN NQSTVKEIMK
301: QLRSEFKSRG DVLNIFVPED NETGGCLGFG YIYIDPQGVD GGDLWKSFEI DGLPITLTTA SPKLCFEAEI VGKKKANDED EKTALKKMLL PLNTSLPTLM
401: YTQRRYSWTD KRPDITAESY KQETNDCWAA ALHRAYSALL TLSGSPGPVL TRQDIIDGLD EAYQASGDGI ERLKYAISFM EKYVKEMNIY RRPRGNDASS
501: YEDFESFTLQ LLATTPVMVT VECLPGFLSF DGQGIFSPSD MDCRMRTFEK FPIHCLLLTG NDVKDGIEYW KLHETKGKDW GVEGFIMMER HKCLLKSVVE
601: LKIVTTPEIR LGDTEILETP KNQQKDKKRR KKVHQDALLK PKKLQKHKLC KKKQKKVAAT TEPSEINSDD PEALVKPQKP KRLKKIVDEL SNRLDEMTEI
701: VKKLKKNSDL LEEENNNTPK EKVVDHECYF ESEDADFKNR RTIFVLGFDC SFPRDEIKRT LIKHFSSCGA VSRVYIPFHC DTGSPMGFAF ISMGNPDKAL
801: TLNGSYLDGM RLEVTMATKR SEYYGYTNHR GCQRCGIASA KRLAKRFYDR TRIRIPLVPS DF

Best Arabidopsis Sequence Match ( AT1G73490.2 )
(BLAST)

001: MDRRLKKCST STDVESVHDV SKVTDPLQKA KRELDNVEIK EKQKKQKNQN ETSEKQETKK FSTVYEKFND TIKELDRVSG TCPIRPAIPF TPPKEKVEPI
101: YHNECNFDDK AHLGVSDSAL FVQGFDTSHP RHEIKTALWN HFSSCGKVYL IYVPIACSTG ASVGYAFIDM KNETKGLTLN GSHLGGRKID VMFAIDREEF
201: YFSSNLKHCQ RCRNYRPWLV LKAMSDACFE YHQRIKPRIV GTPHSKIGRF TAIIGRRSYS

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HQ94]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.