Factsheet for Zm00001d018553_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi, nucleus

Predictor Summary:

plastid 1
nucleus 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82679	Sorghum	nucleus	10.63	19.16
CDX91456	Canola	mitochondrion	8.97	19.01
CDX91465	Canola	nucleus	10.96	17.84
Zm00001d049399_P001	Maize	plasma membrane	36.88	15.86
CDX91457	Canola	mitochondrion	2.66	15.09
CDX91450	Canola	nucleus	10.3	14.9
CDX91458	Canola	nucleus	10.96	14.6
CDX91454	Canola	nucleus	10.3	13.78
CDY54454	Canola	nucleus	10.63	13.62
Bra032377.1-P	Field mustard	nucleus, plastid	6.98	13.38
Bra005114.1-P	Field mustard	nucleus	9.97	12.82
AT1G72800.1	Thale cress	nucleus	13.95	12.54
CDX90296	Canola	nucleus	12.62	12.06
Bra012610.1-P	Field mustard	nucleus	7.64	11.98
CDY12105	Canola	plastid	13.29	11.43
Zm00001d032748_P001	Maize	nucleus	25.91	10.16
Bra020207.1-P	Field mustard	nucleus	9.3	10.04
CDX90410	Canola	nucleus	6.98	9.86
CDY26273	Canola	nucleus	6.98	9.72
CDY09156	Canola	cytosol	9.63	9.35
CDY70171	Canola	cytosol, nucleus, plastid	7.31	8.98
AT1G73490.2	Thale cress	nucleus	7.64	8.85
CDY09605	Canola	mitochondrion, plastid	5.98	8.78
Bra010724.1-P	Field mustard	nucleus	15.28	5.34

Protein Annotations

EnsemblPlants:Zm00001d018553_P001	EnsemblPlants:Zm00001d018553_T001	EnsemblPlantsGene:Zm00001d018553	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	ProteinID:AQK76455.1	SEG:seg
SUPFAM:SSF54928	UniParc:UPI0008455B0C	UniProt:A0A1D6HQA5	MapMan:35.2	:	:

Description

Nucleolin 2

Coordinates

chr5:+:222836020..222839073

Molecular Weight (calculated)

32940.6 Da

IEP (calculated)

4.402

GRAVY (calculated)

-1.020

Length

301 amino acids

Sequence
(BLAST)

001: MGYLFSILHF QLMIRLSENT LMAHLSTFLP ALMDAKVKKV QTKKAPAPKI AKQESSDDDT SDETSESDEM PIHLLIKEHA KKPAAKPLAT VAKNGSKTVK
101: QESSSDEDSS EDESDDNSDD EPAKKAAAKP WVPLLKMEVP PKSKAPAATI KKKDSSESES ESDSEVEEAL SAAKKESSSE DEDDSSEESS DDEPTKVEEK
201: KDPKVSENIG SEDESSKDES DKDSEEPANT PKKAPVHTSE KQTATKEKAA RGNNISIFIW GFDKNISEDE IWSSLEQHFS DCGEMTRVSI PTDHEPGAIK
301: G

Best Arabidopsis Sequence Match ( AT3G18610.1 )
(BLAST)

001: MGKSSKKSVT EVETPASMTK PLKKGKRDAE EDLDMQVTKK QKKELIDVVQ KEKAEKTVPK KVESSSSDAS DSDEEEKTKE TPSKLKDESS SEEEDDSSSD
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPVKKQP AVLEKAKIES SSSDDDSSSD EETVPMKKQT
201: AVLEKAKAES SSSDDGSSSD EEPTPAKKEP IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS
301: EEDSDEEESD DEKPPTKKAK VSSKTSKQES SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI
401: ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR
501: SHFSKCGEVT RVHVPTDRET GASRGFAYID LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS
601: DRGAPRGRFS TRGRGPSKPS VMESSKGTKT VFNDEE

Arabidopsis Description

NUCL2Nucleolin 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEP5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.