Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012610.1-P | Field mustard | nucleus | 73.24 | 81.25 |
| CDY09605 | Canola | mitochondrion, plastid | 42.72 | 44.39 |
| CDY26273 | Canola | nucleus | 42.72 | 42.13 |
| CDY70171 | Canola | cytosol, nucleus, plastid | 42.25 | 36.73 |
| CDY09156 | Canola | cytosol | 44.6 | 30.65 |
| CDX91465 | Canola | nucleus | 26.29 | 30.27 |
| CDX91458 | Canola | nucleus | 28.64 | 26.99 |
| CDX91450 | Canola | nucleus | 25.82 | 26.44 |
| CDX91454 | Canola | nucleus | 26.29 | 24.89 |
| CDY54454 | Canola | nucleus | 26.29 | 23.83 |
| OQU82679 | Sorghum | nucleus | 15.49 | 19.76 |
| CDX91456 | Canola | mitochondrion | 12.68 | 19.01 |
| CDX91457 | Canola | mitochondrion | 4.69 | 18.87 |
| CDX90296 | Canola | nucleus | 26.76 | 18.1 |
| CDY12105 | Canola | plastid | 26.29 | 16.0 |
| CDX92253 | Canola | nucleus | 19.72 | 14.89 |
| CDY20455 | Canola | nucleus | 14.08 | 9.93 |
| CDY60074 | Canola | nucleus | 20.19 | 9.77 |
| CDY65178 | Canola | nucleus | 20.66 | 9.13 |
| CDX93706 | Canola | nucleus | 19.72 | 8.38 |
| CDY59893 | Canola | nucleus | 19.25 | 8.02 |
| CDX77274 | Canola | nucleus | 21.13 | 7.77 |
| CDY16474 | Canola | nucleus | 16.9 | 7.44 |
| Zm00001d018553_P001 | Maize | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 9.86 | 6.98 |
| CDX99339 | Canola | nucleus | 18.78 | 6.83 |
| CDX92252 | Canola | nucleus | 18.31 | 6.49 |
| CDX93704 | Canola | nucleus | 20.19 | 6.3 |
| CDX99340 | Canola | nucleus | 18.31 | 6.24 |
| CDY36208 | Canola | endoplasmic reticulum, mitochondrion, nucleus, vacuole | 12.21 | 5.04 |
Protein Annotations
| EnsemblPlants:CDX90410 | EnsemblPlantsGene:GSBRNA2T00151014001 | Gene3D:3.30.70.330 | GO:A0A078DMM6 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PFscan:PS50102 | ProteinID:CDX90410 | ProteinID:CDX90410.1 | SUPFAM:SSF54928 | UniParc:UPI0004EE2A35 | MapMan:35.2 |
Description
BnaA03g43710D
Coordinates
chrLK031863:-:25253..26757
Molecular Weight (calculated)
23734.3 Da
IEP (calculated)
8.627
GRAVY (calculated)
-0.528
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKCGSGLSN GSADEQVEDS MPIAKPVTTT GETVLQPCSS SKTNLKRQKI HNESKANLKK QKETEREKED SCCYGCEGAT GNSLETIFVK GFQHLRPRDE
101: IKNELSNFFG SCGKVVRVFV PMQCIVSFLN NRFIFIDYSN GENEALKLNG SYMGGRKLEV KMATSSDEYY GFVNFAGCDL CRGPGKLNLR ARKPFDFDKA
201: YFKILAEKAN SKI
101: IKNELSNFFG SCGKVVRVFV PMQCIVSFLN NRFIFIDYSN GENEALKLNG SYMGGRKLEV KMATSSDEYY GFVNFAGCDL CRGPGKLNLR ARKPFDFDKA
201: YFKILAEKAN SKI
001: MDRRLKKCST STDVESVHDV SKVTDPLQKA KRELDNVEIK EKQKKQKNQN ETSEKETKKF STVYEKFNDT IKELDRVSGT CPIRPAIPFT PPKEKVEPIY
101: HNECNFDDKA HLGVSDSALF VQGFDTSHPR HEIKTALWNH FSSCGKVYLI YVPIACSTGA SVGYAFIDMK NETKGLTLNG SHLGGRKIDV MFAIDREEFY
201: FSSNLKHCQR CRNYRPWLVL KAMSDACFEY HQRIKPRIVG TPHSKIGRFT AIIGRRSYS
101: HNECNFDDKA HLGVSDSALF VQGFDTSHPR HEIKTALWNH FSSCGKVYLI YVPIACSTGA SVGYAFIDMK NETKGLTLNG SHLGGRKIDV MFAIDREEFY
201: FSSNLKHCQR CRNYRPWLVL KAMSDACFEY HQRIKPRIVG TPHSKIGRFT AIIGRRSYS
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HQ94]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.