Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60074 | Canola | nucleus | 76.97 | 84.32 |
| CDY59893 | Canola | nucleus | 65.15 | 61.45 |
| CDX93706 | Canola | nucleus | 63.69 | 61.28 |
| CDX77274 | Canola | nucleus | 64.94 | 54.06 |
| GSMUA_Achr10P... | Banana | nucleus | 30.29 | 50.17 |
| AT1G48920.1 | Thale cress | nucleus | 57.05 | 49.37 |
| GSMUA_Achr11P... | Banana | nucleus | 30.29 | 48.18 |
| CDX93704 | Canola | nucleus | 61.83 | 43.7 |
| CDX92253 | Canola | nucleus | 24.27 | 41.49 |
| CDY16474 | Canola | nucleus | 40.66 | 40.5 |
| TraesCS7B01G183600.1 | Wheat | nucleus | 44.4 | 37.94 |
| Os08t0192900-01 | Rice | nucleus | 43.57 | 36.71 |
| TraesCS7D01G289200.1 | Wheat | nucleus | 43.15 | 36.36 |
| HORVU7Hr1G068630.2 | Barley | nucleus | 42.74 | 36.01 |
| TraesCS7A01G286200.1 | Wheat | nucleus | 42.32 | 33.55 |
| CDX92252 | Canola | nucleus | 41.7 | 33.44 |
| PGSC0003DMT400003013 | Potato | nucleus | 43.15 | 33.23 |
| Solyc02g014310.2.1 | Tomato | nucleus | 42.95 | 32.81 |
| CDX99340 | Canola | nucleus | 42.12 | 32.48 |
| EES14672 | Sorghum | nucleus | 43.36 | 32.3 |
| Os04t0620700-01 | Rice | nucleus | 45.64 | 31.12 |
| TraesCS2D01G465200.1 | Wheat | nucleus | 46.68 | 30.78 |
| EER94106 | Sorghum | nucleus | 41.7 | 30.27 |
| TraesCS2B01G486000.4 | Wheat | nucleus | 45.64 | 30.18 |
| TraesCS2A01G464300.3 | Wheat | nucleus | 44.4 | 29.23 |
| CDX91465 | Canola | nucleus | 11.2 | 29.19 |
| Zm00001d049399_P001 | Maize | plasma membrane | 41.7 | 28.71 |
| CDX91456 | Canola | mitochondrion | 8.3 | 28.17 |
| Zm00001d032748_P001 | Maize | nucleus | 43.15 | 27.08 |
| CDY20455 | Canola | nucleus | 16.39 | 26.16 |
| CDX91458 | Canola | nucleus | 11.62 | 24.78 |
| CDX91450 | Canola | nucleus | 10.58 | 24.52 |
| CDX99339 | Canola | nucleus | 28.42 | 23.38 |
| CDX91454 | Canola | nucleus | 10.79 | 23.11 |
| CDY54454 | Canola | nucleus | 11.2 | 22.98 |
| CDX91457 | Canola | mitochondrion | 2.49 | 22.64 |
| CDY09605 | Canola | mitochondrion, plastid | 9.54 | 22.44 |
| CDY26273 | Canola | nucleus | 9.54 | 21.3 |
| CDX90410 | Canola | nucleus | 9.13 | 20.66 |
| CDY70171 | Canola | cytosol, nucleus, plastid | 10.37 | 20.41 |
| CDX90296 | Canola | nucleus | 12.03 | 18.41 |
| CDY09156 | Canola | cytosol | 11.41 | 17.74 |
| CDY12105 | Canola | plastid | 11.41 | 15.71 |
| CDY36208 | Canola | endoplasmic reticulum, mitochondrion, nucleus, vacuole | 16.6 | 15.5 |
Protein Annotations
| MapMan:17.1.1.1.1 | Gene3D:3.30.70.330 | GO:A0A078JC11 | UniProt:A0A078JC11 | EnsemblPlants:CDY65178 | ProteinID:CDY65178 |
| ProteinID:CDY65178.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00045334001 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:NUCL_RRM1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44047 | PANTHER:PTHR44047:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0004EDC0A3 | SEG:seg | : | : | : |
Description
BnaCnng45920DBnaCnng45920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JC11]
Coordinates
chrLK034680:+:2331..5380
Molecular Weight (calculated)
50727.4 Da
IEP (calculated)
4.801
GRAVY (calculated)
-1.019
Length
482 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKSATKVE AAPAAIKATK PLKKGKRDPE DDLDTKVNLK KQKKDVIAAV QKEKAEKKVP KKVESSDSSD SSDIEEEVKE PAPKKAVAST NGTVAKDDSS
101: SEEESSDEEE VAATKKPAAV AKNGSVKAKA ESSSEDDSSD ESDDESEKPA AKKAAPATTK AASSADSSEE DSDEESEDEK PAPKKDSSSD DSDSDESESE
201: DEKETPKKKN SDAEMVDAEQ KQLKTPSTPA TGGSKTLFVA NLSFNVERSD VENFFKDVGD VVDVRFAMSK DDGRFRGFGH VEFATAEQAQ KALELHGTSM
301: LGRDIRLDVA QERGERPAYT PQSGAGGNFR SSGGGGQSIF VKGFDSSLPE EDIKSALSAH FASCGDITRV SVPCDRETGA SKGIAYLDFK DGTDKAFELN
401: GSDMGGWSIV VDQPREKSSG GFGGGGRSGG GRFGSGRSGG GRGRDSGRGR FGGGRGGGRG RDGGRGFNRP SFSGKKTTFN DE
101: SEEESSDEEE VAATKKPAAV AKNGSVKAKA ESSSEDDSSD ESDDESEKPA AKKAAPATTK AASSADSSEE DSDEESEDEK PAPKKDSSSD DSDSDESESE
201: DEKETPKKKN SDAEMVDAEQ KQLKTPSTPA TGGSKTLFVA NLSFNVERSD VENFFKDVGD VVDVRFAMSK DDGRFRGFGH VEFATAEQAQ KALELHGTSM
301: LGRDIRLDVA QERGERPAYT PQSGAGGNFR SSGGGGQSIF VKGFDSSLPE EDIKSALSAH FASCGDITRV SVPCDRETGA SKGIAYLDFK DGTDKAFELN
401: GSDMGGWSIV VDQPREKSSG GFGGGGRSGG GRFGSGRSGG GRGRDSGRGR FGGGRGGGRG RDGGRGFNRP SFSGKKTTFN DE
001: MGKSKSATKV VAEIKATKPL KKGKREPEDD IDTKVSLKKQ KKDVIAAVQK EKAVKKVPKK VESSDDSDSE SEEEEKAKKV PAKKAASSSD ESSDDSSSDD
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE
Arabidopsis Description
NUCL1Nucleolin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.