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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid

Predictor Summary:
  • plastid 4
  • mitochondrion 3
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:mitochondrion
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY26273 Canola nucleus 91.71 87.04
Bra032377.1-P Field mustard nucleus, plastid 63.9 83.44
CDY70171 Canola cytosol, nucleus, plastid 86.34 72.24
CDX90410 Canola nucleus 44.39 42.72
CDX91465 Canola nucleus 28.78 31.89
CDX91450 Canola nucleus 29.27 28.85
CDX91458 Canola nucleus 30.24 27.43
CDY09156 Canola cytosol 40.0 26.45
CDX91454 Canola nucleus 28.29 25.78
CDY54454 Canola nucleus 29.27 25.53
OQU82679 Sorghum nucleus 17.56 21.56
CDX91456 Canola mitochondrion 14.15 20.42
CDX90296 Canola nucleus 28.78 18.73
CDY12105 Canola plastid 28.78 16.86
CDX92253 Canola nucleus 18.05 13.12
CDY60074 Canola nucleus 21.95 10.23
CDY65178 Canola nucleus 22.44 9.54
CDX91457 Canola mitochondrion 2.44 9.43
CDY59893 Canola nucleus 20.98 8.41
CDX93706 Canola nucleus 20.49 8.38
CDX77274 Canola nucleus 22.93 8.12
CDY20455 Canola nucleus 11.71 7.95
CDY16474 Canola nucleus 17.56 7.44
CDX92252 Canola nucleus 19.02 6.49
CDX93704 Canola nucleus 21.46 6.45
Zm00001d018553_P001 Maize endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole 8.78 5.98
CDX99339 Canola nucleus 17.07 5.97
CDX99340 Canola nucleus 18.05 5.92
CDY36208 Canola endoplasmic reticulum, mitochondrion, nucleus, vacuole 8.78 3.49
Protein Annotations
Gene3D:3.30.70.330MapMan:35.2GO:A0A078F598UniProt:A0A078F598EnsemblPlants:CDY09605ProteinID:CDY09605
ProteinID:CDY09605.1ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00031240001InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfPFAM:PF00076PFscan:PS50102
InterPro:RBD_domain_sfInterPro:RRM_domSMART:SM00360SUPFAM:SSF54928UniParc:UPI0004EE0D89SEG:seg
Description
BnaC05g23140DBnaC05g23140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F598]
Coordinates
chrLK031997:+:927208..928291
Molecular Weight (calculated)
23203.2 Da
IEP (calculated)
9.957
GRAVY (calculated)
-0.582
Length
205 amino acids
Sequence
(BLAST)
001: MSIAKPVTPT LKTNLKKQTN KNKKTFSLLS RTVLHLCSSS KTNLKRQKIL KESKANLKKQ KKTERERKKK EDSCCFGCEE AYENNDETIF VKGFQHLRPR
101: DEIKNELSNI FGSCGKIISV FVPMQCGTCV PLGFAFINLL NGKEKALKLN GSYMGGRKLK VMIATDSDEY FGFDDFDGCD LCGGPGKVRS RRPIDIDKVS
201: FELYH
Best Arabidopsis Sequence Match ( AT1G73490.2 )
(BLAST)
001: MDRRLKKCST STDVESVHDV SKVTDPLQKA KRELDNVEIK EKQKKQKNQN ETSEKQETKK FSTVYEKFND TIKELDRVSG TCPIRPAIPF TPPKEKVEPI
101: YHNECNFDDK AHLGVSDSAL FVQGFDTSHP RHEIKTALWN HFSSCGKVYL IYVPIACSTG ASVGYAFIDM KNETKGLTLN GSHLGGRKID VMFAIDREEF
201: YFSSNLKHCQ RCRNYRPWLV LKAMSDACFE YHQRIKPRIV GTPHSKIGRF TAIIGRRSYS
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HQ94]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.