CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92253	Canola	nucleus	36.01	74.82
Bra022338.1-P	Field mustard	nucleus	31.4	70.5
GSMUA_Achr10P...	Banana	nucleus	15.7	31.62
CDX92252	Canola	nucleus	32.08	31.28
CDY60074	Canola	nucleus	23.38	31.14
CDX99340	Canola	nucleus	32.25	30.24
GSMUA_Achr11P...	Banana	nucleus	15.53	30.03
CDY65178	Canola	nucleus	23.38	28.42
CDX93706	Canola	nucleus	24.23	28.34
CDY59893	Canola	nucleus	23.72	27.2
CDX77274	Canola	nucleus	25.94	26.25
CDX91465	Canola	nucleus	8.19	25.95
AT3G18610.1	Thale cress	nucleus	25.26	23.27
CDX91456	Canola	mitochondrion	5.46	22.54
TraesCS7B01G183600.1	Wheat	nucleus	21.5	22.34
CDY16474	Canola	nucleus	18.43	22.31
Os08t0192900-01	Rice	nucleus	21.67	22.2
TraesCS7D01G289200.1	Wheat	nucleus	21.5	22.03
HORVU7Hr1G068630.2	Barley	nucleus	20.82	21.33
CDX93704	Canola	nucleus	24.74	21.26
Os04t0620700-01	Rice	nucleus	25.26	20.93
PGSC0003DMT400003013	Potato	nucleus	22.35	20.93
Solyc02g014310.2.1	Tomato	nucleus	22.53	20.92
TraesCS7A01G286200.1	Wheat	nucleus	21.67	20.89
EES14672	Sorghum	nucleus	22.87	20.71
CDX91450	Canola	nucleus	7.34	20.67
CDX91458	Canola	nucleus	7.85	20.35
EER94106	Sorghum	nucleus	23.04	20.33
CDY20455	Canola	nucleus	10.41	20.2
CDX91454	Canola	nucleus	7.68	20.0
CDY54454	Canola	nucleus	7.85	19.57
Zm00001d049399_P001	Maize	plasma membrane	23.38	19.57
TraesCS2B01G486000.4	Wheat	nucleus	23.55	18.93
TraesCS2D01G465200.1	Wheat	nucleus	23.55	18.88
CDX90410	Canola	nucleus	6.83	18.78
Zm00001d032748_P001	Maize	nucleus	24.06	18.36
TraesCS2A01G464300.3	Wheat	nucleus	22.87	18.31
CDY09605	Canola	mitochondrion, plastid	5.97	17.07
CDY26273	Canola	nucleus	6.14	16.67
CDX90296	Canola	nucleus	8.36	15.56
CDY70171	Canola	cytosol, nucleus, plastid	6.31	15.1
CDX91457	Canola	mitochondrion	1.37	15.09
CDY09156	Canola	cytosol	7.85	14.84
CDY12105	Canola	plastid	8.02	13.43
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	9.22	10.47

Protein Annotations

EnsemblPlants:CDX99339	EnsemblPlantsGene:GSBRNA2T00107635001	Gene3D:3.30.70.330	GO:A0A078EER8	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
ncoils:Coil	PFAM:PF00076	PFscan:PS50102	ProteinID:CDX99339	ProteinID:CDX99339.1	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE3EBB	MapMan:17.1.1.1.1	:	:

Description

BnaC05g34540D

Coordinates

chrLK031909:+:1232893..1236933

Molecular Weight (calculated)

64631.1 Da

IEP (calculated)

10.612

GRAVY (calculated)

-0.971

Length

586 amino acids

Sequence
(BLAST)

001: MVKYKKESVT KVEAAPASTK KPSKKSKRDA EVDLDIQNNP KKQKKELIQA EKKAPPPKKV ETSNSSDSKK ELKKDTDVEM AEAKQKSNAK QTQTNETPST
101: QARGGSNQLF AGNLSSKTKK SDLEKFFKGV GGEIKVVRLA RGYAHVEFAS VEAVQKALKL NGKPLLGRKI KLDDFNKNPA PRSSNADGNF QRGEGSQVKT
201: ILVKKNGKYV GEDEMKTALR DHFSACGEIT RFAIPCDQDT GATKGMAFLG FINEDGFNKA LELNGSELGG RNIVVTEAST RVQNGDRKSG RRQGRRRGRP
301: LRQRRRDSFK KGPGKGNGET VEHPAKQAEA ALDSKTKPSK KSKRDVEVDL DIPKDAKKQK KELIQAVEKA PPKKNNKKKK KKKKNANVEM AEAEQKPIAK
401: QPKTLFAGRL PFHIEKSDLE SFFKEVGEIK DVRLAKGIAH VEFASEEAAQ KAMKLNGKPL LGRNILLDFA NAKPAPRPRN LVKTIFVTGF NKSLSEDEMK
501: TALRAHFSDC GEIKRISLPY YQETGDSKGV AYLDFSEDGF NKAMELNGSE LGGRNIVVIE ARPKEKNADR NSGDDSSKRG PGRGNG

Best Arabidopsis Sequence Match ( AT1G48920.1 )
(BLAST)

001: MGKSKSATKV VAEIKATKPL KKGKREPEDD IDTKVSLKKQ KKDVIAAVQK EKAVKKVPKK VESSDDSDSE SEEEEKAKKV PAKKAASSSD ESSDDSSSDD
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE

Arabidopsis Description

NUCL1Nucleolin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.