CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020207.1-P	Field mustard	nucleus	85.16	94.62
CDX90410	Canola	nucleus	30.65	44.6
CDY09605	Canola	mitochondrion, plastid	26.45	40.0
CDY26273	Canola	nucleus	26.45	37.96
CDX91465	Canola	nucleus	22.26	37.3
CDY70171	Canola	cytosol, nucleus, plastid	26.45	33.47
CDX91450	Canola	nucleus	21.29	31.73
CDX91458	Canola	nucleus	22.58	30.97
CDX91454	Canola	nucleus	21.94	30.22
CDY54454	Canola	nucleus	22.9	30.21
OQU82679	Sorghum	nucleus	13.55	25.15
CDX91456	Canola	mitochondrion	10.65	23.24
CDX90296	Canola	nucleus	22.58	22.22
CDY12105	Canola	plastid	21.94	19.43
CDX92253	Canola	nucleus	15.48	17.02
CDX91457	Canola	mitochondrion	2.58	15.09
CDY60074	Canola	nucleus	17.74	12.5
CDY20455	Canola	nucleus	11.61	11.92
CDY65178	Canola	nucleus	17.74	11.41
CDX93706	Canola	nucleus	17.74	10.98
CDX77274	Canola	nucleus	20.0	10.71
CDY59893	Canola	nucleus	16.45	9.98
Zm00001d018553_P001	Maize	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	9.35	9.63
CDX92252	Canola	nucleus	18.06	9.32
CDX99340	Canola	nucleus	18.71	9.28
CDY16474	Canola	nucleus	13.55	8.68
CDX99339	Canola	nucleus	14.84	7.85
CDX93704	Canola	nucleus	17.1	7.77
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	9.03	5.43

Protein Annotations

MapMan:12.3.2.2	Gene3D:3.30.70.330	GO:A0A078F6Z8	UniProt:A0A078F6Z8	EnsemblPlants:CDY09156	ProteinID:CDY09156
ProteinID:CDY09156.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00001387001	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR31802	PANTHER:PTHR31802:SF8	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0004EF4BF9	:	:	:	:	:

Description

BnaA02g05820DBnaA02g05820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6Z8]

Coordinates

chrLK031993:+:390454..392883

Molecular Weight (calculated)

35278.1 Da

IEP (calculated)

8.403

GRAVY (calculated)

-0.617

Length

310 amino acids

Sequence
(BLAST)

001: MEFWGAKVKA GQTLKVKPGE NCLIHISQAS LGKAKKGVFG LLYATVDEKK LLLGTLSQDC FPHINFDHLL FDREFELSHT LDRGYVHFIG HQRNKKKRAN
101: ESSKTPVSFN TGKSVLQPCS ESKTNQKKQK IQKENSEEIK EMNKSIKELS EAVKTLQQIL LTKADLPEEK ETPKNEDSCC FGCEEATGNN EQTIFVKGFE
201: NLRPRAEIKN ALSNFFGSCG EITRVYVPFE CKNRIPLGFA FIDLRKGEGN EKALELNGSY MGGKELEVTM ASHRDEYYGF TDFHGCERCP VFLDHIYFPS
301: SIKHRRSVYR

Best Arabidopsis Sequence Match ( AT1G73490.1 )
(BLAST)

001: MDRRLKKCST STDVESVHDV SKVTDPLQKA KRELDNVEIK EKQKKQKNQN ETSEKETKKF STVYEKFNDT IKELDRVSGT CPIRPAIPFT PPKEKVEPIY
101: HNECNFDDKA HLGVSDSALF VQGFDTSHPR HEIKTALWNH FSSCGKVYLI YVPIACSTGA SVGYAFIDMK NETKGLTLNG SHLGGRKIDV MFAIDREEFY
201: FSSNLKHCQR CRNYRPWLVL KAMSDACFEY HQRIKPRIVG TPHSKIGRFT AIIGRRSYS

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HQ94]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.