Factsheet for Bra020207.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09156	Canola	cytosol	94.62	85.16
Bra012610.1-P	Field mustard	nucleus	32.97	47.92
Bra032377.1-P	Field mustard	nucleus, plastid	17.2	30.57
Bra005114.1-P	Field mustard	nucleus	24.37	29.06
OQU82679	Sorghum	nucleus	13.98	23.35
Bra022338.1-P	Field mustard	nucleus	16.13	17.24
Bra032269.1-P	Field mustard	nucleus	20.43	12.95
Bra014162.1-P	Field mustard	nucleus	23.66	11.36
Bra018764.1-P	Field mustard	nucleus	20.07	11.2
Bra022337.1-P	Field mustard	nucleus	20.43	9.53
Zm00001d018553_P001	Maize	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	10.04	9.3
Bra010724.1-P	Field mustard	nucleus	26.88	8.7
Bra018762.1-P	Field mustard	nucleus	19.71	8.53

Protein Annotations

EnsemblPlants:Bra020207.1	EnsemblPlants:Bra020207.1-P	EnsemblPlantsGene:Bra020207	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR31802	PANTHER:PTHR31802:SF8	PFAM:PF00076	PFscan:PS50102	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI00025434AE	UniProt:M4DUL4	MapMan:12.3.2.2	:	:

Description

AT3G44750 (E=1e-022) HD2A, ATHD2A, HDA3, HDT1 | HDA3 (HISTONE DEACETYLASE 3); histone deacetylase/ nucleic acid binding / zinc ion binding

Coordinates

chrA02:+:5568145..5570144

Molecular Weight (calculated)

31738.8 Da

IEP (calculated)

8.913

GRAVY (calculated)

-0.653

Length

279 amino acids

Sequence
(BLAST)

001: MEFWGAKVKA GKTLKVKPGE NCLIHISQAS LGKAKKGVFG LLYATVDDKK LLLGTLSQDS FPHINFDHLL FDREFELSHT LDRGYVHFIG HQRKKKKRAN
101: ESSKTPVSFN TGKSVLQPCS ESKTNQKKQK IQKENSEEKE TPKNEDSCCF GCEEATGNNE QTIFVKGFEN LRPRAEIKNA LSNFFGSCGE ITRVYVPFEC
201: KNRIPLGFAF IDLRKGEGNE KALELNGSYM GGKELEVTMA SHRDEYYGFT DFHGCERCPV FLDHIYFPSS IKHRRSVYR

Best Arabidopsis Sequence Match ( AT5G22650.1 )
(BLAST)

001: MEFWGVAVTP KNATKVTPEE DSLVHISQAS LDCTVKSGES VVLSVTVGGA KLVIGTLSQD KFPQISFDLV FDKEFELSHS GTKANVHFIG YKSPNIEQDD
101: FTSSDDEDVP EAVPAPAPTA VTANGNAGAA VVKADTKPKA KPAEVKPAEE KPESDEEDES DDEDESEEDD DSEKGMDVDE DDSDDDEEED SEDEEEEETP
201: KKPEPINKKR PNESVSKTPV SGKKAKPAAA PASTPQKTEE KKKGGHTATP HPAKKGGKSP VNANQSPKSG GQSSGGNNNK KPFNSGKQFG GSNNKGSNKG
301: KGKGRA

Arabidopsis Description

HDT2Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.