Factsheet for Bra032377.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09605	Canola	mitochondrion, plastid	83.44	63.9
CDY26273	Canola	nucleus	82.17	59.72
CDY70171	Canola	cytosol, nucleus, plastid	80.25	51.43
Bra012610.1-P	Field mustard	nucleus	36.31	29.69
Bra020207.1-P	Field mustard	nucleus	30.57	17.2
OQU82679	Sorghum	nucleus	14.65	13.77
Bra005114.1-P	Field mustard	nucleus	20.38	13.68
Bra022338.1-P	Field mustard	nucleus	14.65	8.81
Bra032269.1-P	Field mustard	nucleus	21.66	7.73
Zm00001d018553_P001	Maize	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	13.38	6.98
Bra018764.1-P	Field mustard	nucleus	19.11	6.0
Bra014162.1-P	Field mustard	nucleus	20.38	5.51
Bra018762.1-P	Field mustard	nucleus	21.02	5.12
Bra022337.1-P	Field mustard	nucleus	17.83	4.68
Bra010724.1-P	Field mustard	nucleus	22.93	4.18

Protein Annotations

EnsemblPlants:Bra032377.1	EnsemblPlants:Bra032377.1-P	EnsemblPlantsGene:Bra032377	Gene3D:3.30.70.330	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
ncoils:Coil	SEG:seg	UniParc:UPI00025425BA	UniProt:M4EU95	MapMan:35.2	:

Description

AT1G73490 (E=2e-007) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA09:+:22030035..22031308

Molecular Weight (calculated)

17940.7 Da

IEP (calculated)

9.738

GRAVY (calculated)

-0.715

Length

157 amino acids

Sequence
(BLAST)

001: MNVSADERED SMSIAKPVTP TLKTNLKKQT NKNKKTFSLL SRTVLHLCSS SKTNLKRQKI LKESKANLKK QKKTERERKK KEDSCCFGCE EAYENNDETI
101: FVKGFQHLRP RDEIKNELSN IFGSCGKIIS VFVPMHCGTC VPLGPIDIDK VSFELYH

Best Arabidopsis Sequence Match ( AT1G73490.2 )
(BLAST)

001: MDRRLKKCST STDVESVHDV SKVTDPLQKA KRELDNVEIK EKQKKQKNQN ETSEKQETKK FSTVYEKFND TIKELDRVSG TCPIRPAIPF TPPKEKVEPI
101: YHNECNFDDK AHLGVSDSAL FVQGFDTSHP RHEIKTALWN HFSSCGKVYL IYVPIACSTG ASVGYAFIDM KNETKGLTLN GSHLGGRKID VMFAIDREEF
201: YFSSNLKHCQ RCRNYRPWLV LKAMSDACFE YHQRIKPRIV GTPHSKIGRF TAIIGRRSYS

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HQ94]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.