CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91465	Canola	nucleus	23.35	21.08
CDX91450	Canola	nucleus	25.75	20.67
CDX91458	Canola	nucleus	25.75	19.03
Bra005114.1-P	Field mustard	nucleus	25.75	18.38
CDY54454	Canola	nucleus	25.15	17.87
CDX91454	Canola	nucleus	23.95	17.78
CDY09605	Canola	mitochondrion, plastid	21.56	17.56
CDY26273	Canola	nucleus	20.96	16.2
CDX91456	Canola	mitochondrion	13.77	16.2
Bra012610.1-P	Field mustard	nucleus	18.56	16.15
CDX90410	Canola	nucleus	19.76	15.49
CDX91457	Canola	mitochondrion	4.79	15.09
Bra032377.1-P	Field mustard	nucleus, plastid	13.77	14.65
CDY70171	Canola	cytosol, nucleus, plastid	20.96	14.29
Bra020207.1-P	Field mustard	nucleus	23.35	13.98
CDY09156	Canola	cytosol	25.15	13.55
CDX90296	Canola	nucleus	25.15	13.33
AT1G73490.2	Thale cress	nucleus	20.36	13.08
AT1G72800.1	Thale cress	nucleus	24.55	12.24
CDY12105	Canola	plastid	25.15	12.0
EES14672	Sorghum	nucleus	43.11	11.13
Zm00001d018553_P001	Maize	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	19.16	10.63
EER94106	Sorghum	nucleus	34.13	8.58
Bra010724.1-P	Field mustard	nucleus	22.75	4.41

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A1Z5RGF4	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlants:OQU82679	ProteinID:OQU82679
ProteinID:OQU82679.1	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43987	PANTHER:PTHR43987:SF2	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3005G002350	SUPFAM:SSF54928	UniParc:UPI000B8B9FF0	SEG:seg

Description

hypothetical protein

Coordinates

chr5:+:174169..175790

Molecular Weight (calculated)

18214.6 Da

IEP (calculated)

10.183

GRAVY (calculated)

-0.602

Length

167 amino acids

Sequence
(BLAST)

001: MLQNMQHLFF LQALKDNQSK ELLGCRIVLN LAKQTPQSGN RGCSQKPGQG ICNSIYIYNI RGFDKHLAVD KIRSALEQHF GECGEITRVS IPLTDNASGR
101: KGFAFIDFKD QNSVSKALEL DGSDRLHVAK ARGNVQPHGG GISGDRSGGR DGGRGRGGGR FRDHSFS

Best Arabidopsis Sequence Match ( AT1G72800.1 )
(BLAST)

001: MAESSKLSAT TVEAAPAMIK AKDVISPSEK EESDQTEITK VSVLKNLDEK EMIKEFADRL QRLEAKVDLL VTKADLLAIK ADIQELLISA KGEKVPAMKT
101: SAKASSESDD SYMDTSSEDE SSSAEEPVNK PAASAAKPAT KDSLFSAGFK PAAKDSLFSA GFKPDSLFSA GFEPAAKDSL FSAGFKPGSL FSAGFEPAAK
201: DSLFSAGFKP DSLFSVGVKP AAKDSLFSVG VNGRSFSVTG FDASLPVDDI KSALSKYFSS FGEITRVFVP PSHGTGGSLG YAYIDLKEGA EKALELGRHD
301: VGGWDLVVGK AEPIRSGSTW PFPGRCGNQG RCTFC

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9CAJ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.