CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
extracellular 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, extracellular, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	extracellular
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82679	Sorghum	nucleus	15.09	4.79
CDX90410	Canola	nucleus	18.87	4.69
CDX91458	Canola	nucleus	18.87	4.42
CDX91450	Canola	nucleus	16.98	4.33
CDX91465	Canola	nucleus	15.09	4.32
CDX91454	Canola	nucleus	16.98	4.0
CDY54454	Canola	nucleus	16.98	3.83
CDX92253	Canola	nucleus	18.87	3.55
CDY60074	Canola	nucleus	24.53	2.95
CDX91456	Canola	mitochondrion	7.55	2.82
Zm00001d018553_P001	Maize	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	15.09	2.66
CDY20455	Canola	nucleus	15.09	2.65
CDY09156	Canola	cytosol	15.09	2.58
CDY65178	Canola	nucleus	22.64	2.49
CDY09605	Canola	mitochondrion, plastid	9.43	2.44
CDX93706	Canola	nucleus	22.64	2.4
AT1G72800.1	Thale cress	nucleus	15.09	2.39
CDY59893	Canola	nucleus	22.64	2.35
CDY26273	Canola	nucleus	9.43	2.31
CDX90296	Canola	nucleus	11.32	1.9
CDX77274	Canola	nucleus	20.75	1.9
CDY16474	Canola	nucleus	16.98	1.86
CDX93704	Canola	nucleus	22.64	1.76
CDY70171	Canola	cytosol, nucleus, plastid	7.55	1.63
CDX99340	Canola	nucleus	18.87	1.6
CDX99339	Canola	nucleus	15.09	1.37
CDX92252	Canola	nucleus	13.21	1.16
CDY12105	Canola	plastid	7.55	1.14
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	7.55	0.78

Protein Annotations

EnsemblPlants:CDX91457	EnsemblPlantsGene:GSBRNA2T00152790001	ProteinID:CDX91457	ProteinID:CDX91457.1	SEG:seg	UniParc:UPI0004EF49D8
MapMan:35.2	:	:	:	:	:

Description

BnaC04g06930D

Coordinates

chrLK031867:+:1122645..1123035

Molecular Weight (calculated)

6350.9 Da

IEP (calculated)

12.201

GRAVY (calculated)

-1.189

Length

53 amino acids

Sequence
(BLAST)

1: MFAAARRRLT RWKLKTGGGK FRRLSPELEE KFRLRRKELM ASRKIEKSKT KDG

Best Arabidopsis Sequence Match ( AT5G01310.1 )
(BLAST)

001: MEVQIEESGK NQTSPESIEA DKAKQIVVLL IGPPGSGKST FCDTAMRSSH RPWSRICQDI VNNGKAGTKA QCLKMATDSL REGKSVFIDR CNLDREQRSE
101: FIKLGGPEFE VHAVVLELPA QVCISRSVKR TGHEGNLQGG RAAAVVNKML QSKELPKVNE GFSRIMFCYS DADVDNAVNM YNKLGPMDTL PSGCFGEKKL
201: DTKSQPGIMK FFKKVSALPA SSSNEATNTT RKADEMTANV RVSPVKLGSA DIVPTLAFPS ISTADFQFDL EKASDIIVEK AEEFLSKLGT ARLVLVDLSR
301: GSKILSLVKA KASQKNIDSA KFFTFVGDIT KLRSEGGLHC NVIANATNWR LKPGGGGVNA AIFKAAGPDL ETATRVRANT LLPGKAVVVP LPSTCPLHNA
401: EGITHVIHVL GPNMNPNRPD NLNNDYTKGC KTLREAYTSL FEGFLSVVQD QSKLPKRSSQ TAVSDSGEDI KEDSERNKKY KGSQDKAVTN NLESESLEDT
501: RGSGKKMSKG WNTWALALHS IAMHPERHEN VVLEYLDNIV VINDQYPKAR KHVLVLARQE SLDGLEDVRK ENLQLLQEMH NVGLKWVDRF QNEDASLIFR
601: LGYHSVPSMR QLHLHVISQD FNSDSLKNKK HWNSFTTSFF RDSVDVLEEV NSQGKANVAS EDLLKGELRC NRCRSAHPNI PKLKSHVRSC HSQFPDHLLQ
701: NNRLVARAET

Arabidopsis Description

APTXAPRATAXIN-like [Source:TAIR;Acc:AT5G01310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.