CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09605	Canola	mitochondrion, plastid	87.04	91.71
Bra032377.1-P	Field mustard	nucleus, plastid	59.72	82.17
CDY70171	Canola	cytosol, nucleus, plastid	79.63	70.2
CDX90410	Canola	nucleus	42.13	42.72
CDX91465	Canola	nucleus	28.24	32.97
CDX91450	Canola	nucleus	27.78	28.85
CDX91458	Canola	nucleus	28.7	27.43
CDX91454	Canola	nucleus	27.78	26.67
CDY09156	Canola	cytosol	37.96	26.45
CDY54454	Canola	nucleus	27.78	25.53
CDX91456	Canola	mitochondrion	14.81	22.54
OQU82679	Sorghum	nucleus	16.2	20.96
CDX90296	Canola	nucleus	28.7	19.68
CDY12105	Canola	plastid	28.7	17.71
CDX92253	Canola	nucleus	17.59	13.48
CDY60074	Canola	nucleus	20.83	10.23
CDY65178	Canola	nucleus	21.3	9.54
CDX91457	Canola	mitochondrion	2.31	9.43
CDY59893	Canola	nucleus	20.37	8.61
CDY20455	Canola	nucleus	12.04	8.61
CDX93706	Canola	nucleus	19.91	8.58
CDX77274	Canola	nucleus	21.76	8.12
CDY16474	Canola	nucleus	16.2	7.23
CDX92252	Canola	nucleus	19.91	7.15
CDX93704	Canola	nucleus	22.22	7.04
Zm00001d018553_P001	Maize	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	9.72	6.98
CDX99340	Canola	nucleus	19.91	6.88
CDX99339	Canola	nucleus	16.67	6.14
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	9.72	4.07

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	GO:A0A078GNQ6	UniProt:A0A078GNQ6	EnsemblPlants:CDY26273	ProteinID:CDY26273
ProteinID:CDY26273.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00034949001	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE8F9B	SEG:seg

Description

BnaA09g26240DBnaA09g26240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNQ6]

Coordinates

chrLK032187:+:49699..51146

Molecular Weight (calculated)

24446.6 Da

IEP (calculated)

9.609

GRAVY (calculated)

-0.624

Length

216 amino acids

Sequence
(BLAST)

001: MNVSADERED SMSIAKPVTP TLKTNLKKQT NKNKKTFSLL SRTVLHLCSS SKTNLKRQKI LKESKANLKK QKKTERERKK KEDSCCFGCE EAYENNDETI
101: FVKGFQHLRP RDEIKNELSN IFGSCGKIIS VFVPMHCGTC VPLGFAFINL LNGKEKALKL NGSYMGGRKL KVMIATDSDE YFGFDDFDGC DLCGGPGKVR
201: SRRPIDIDKV SFELYH

Best Arabidopsis Sequence Match ( AT1G73490.2 )
(BLAST)

001: MDRRLKKCST STDVESVHDV SKVTDPLQKA KRELDNVEIK EKQKKQKNQN ETSEKQETKK FSTVYEKFND TIKELDRVSG TCPIRPAIPF TPPKEKVEPI
101: YHNECNFDDK AHLGVSDSAL FVQGFDTSHP RHEIKTALWN HFSSCGKVYL IYVPIACSTG ASVGYAFIDM KNETKGLTLN GSHLGGRKID VMFAIDREEF
201: YFSSNLKHCQ RCRNYRPWLV LKAMSDACFE YHQRIKPRIV GTPHSKIGRF TAIIGRRSYS

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HQ94]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.