Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 2
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_05s0020g00100.t01 | Wine grape | mitochondrion | 17.22 | 39.1 |
GSMUA_Achr10P... | Banana | nucleus | 24.5 | 25.43 |
GSMUA_Achr11P... | Banana | nucleus | 23.84 | 23.76 |
CDX92253 | Canola | nucleus | 19.54 | 20.92 |
CDX91456 | Canola | mitochondrion | 8.61 | 18.31 |
CDX93706 | Canola | nucleus | 29.47 | 17.76 |
CDY60074 | Canola | nucleus | 25.83 | 17.73 |
CDX91465 | Canola | nucleus | 10.6 | 17.3 |
CDY59893 | Canola | nucleus | 29.14 | 17.22 |
CDY65178 | Canola | nucleus | 26.16 | 16.39 |
CDX91457 | Canola | mitochondrion | 2.65 | 15.09 |
CDX90410 | Canola | nucleus | 9.93 | 14.08 |
CDY16474 | Canola | nucleus | 22.52 | 14.05 |
CDY54454 | Canola | nucleus | 10.93 | 14.04 |
CDX77274 | Canola | nucleus | 26.16 | 13.64 |
CDX91454 | Canola | nucleus | 9.93 | 13.33 |
CDX91458 | Canola | nucleus | 9.93 | 13.27 |
CDY36208 | Canola | endoplasmic reticulum, mitochondrion, nucleus, vacuole | 22.19 | 12.98 |
CDX91450 | Canola | nucleus | 8.94 | 12.98 |
TraesCS7B01G183600.1 | Wheat | nucleus | 24.17 | 12.94 |
CDX93704 | Canola | nucleus | 28.48 | 12.61 |
TraesCS7D01G289200.1 | Wheat | nucleus | 23.51 | 12.41 |
Solyc02g014310.2.1 | Tomato | nucleus | 25.83 | 12.36 |
PGSC0003DMT400003013 | Potato | nucleus | 25.17 | 12.14 |
Os08t0192900-01 | Rice | nucleus | 22.85 | 12.06 |
CDY26273 | Canola | nucleus | 8.61 | 12.04 |
CDX99340 | Canola | nucleus | 24.83 | 12.0 |
HORVU7Hr1G068630.2 | Barley | nucleus | 22.52 | 11.89 |
CDX92252 | Canola | nucleus | 23.51 | 11.81 |
CDY09605 | Canola | mitochondrion, plastid | 7.95 | 11.71 |
TraesCS7A01G286200.1 | Wheat | nucleus | 23.51 | 11.68 |
CDY09156 | Canola | cytosol | 11.92 | 11.61 |
Os04t0620700-01 | Rice | nucleus | 26.82 | 11.46 |
EER94106 | Sorghum | nucleus | 24.17 | 10.99 |
CDY70171 | Canola | cytosol, nucleus, plastid | 8.61 | 10.61 |
TraesCS2B01G486000.4 | Wheat | nucleus | 25.17 | 10.43 |
CDX99339 | Canola | nucleus | 20.2 | 10.41 |
TraesCS2D01G465200.1 | Wheat | nucleus | 25.17 | 10.4 |
EES14672 | Sorghum | nucleus | 21.85 | 10.2 |
TraesCS2A01G464300.3 | Wheat | nucleus | 24.5 | 10.11 |
Zm00001d032748_P001 | Maize | nucleus | 24.5 | 9.64 |
KRH40855 | Soybean | nucleus | 21.52 | 9.48 |
Zm00001d049399_P001 | Maize | plasma membrane | 21.85 | 9.43 |
CDX90296 | Canola | nucleus | 9.6 | 9.21 |
KRG89142 | Soybean | nucleus | 20.86 | 9.13 |
CDY12105 | Canola | plastid | 9.6 | 8.29 |
Protein Annotations
Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078G1M4 | UniProt:A0A078G1M4 | EnsemblPlants:CDY20455 | ProteinID:CDY20455 |
ProteinID:CDY20455.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00012541001 |
InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23003 |
PANTHER:PTHR23003:SF3 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE8B55 |
Description
BnaC04g05890DBnaC04g05890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1M4]
Coordinates
chrLK032108:-:230858..232592
Molecular Weight (calculated)
33818.4 Da
IEP (calculated)
10.784
GRAVY (calculated)
-0.602
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MILLDKAKRD FYDIKRKAWR NPPAPIPVYK TQQGPRNRAQ RASFFFLFHA QPTNTGGSKT LAALNLSLQV KRSDVEEFFK EAGQVVDVRF GKTEYGRFLG
101: FGMVEFATAR EAQKALEFHG RRLLGCQIRL GISHESEQRP APASAPVYKT QQVPRNRAQR ASVKKRPTNT GGSKTLAAFN LSLQVEKSDI EEFFKEAGQV
201: VDVRFGRTND GDDRFLGFGM VEFATAGEAL KALEFHGRPL LGCQIRLEAS HARGQRPAYT PQSRQRSGVG LPKEDIKSSL LKRVSVPTDH ETGASKRHRE
301: CV
101: FGMVEFATAR EAQKALEFHG RRLLGCQIRL GISHESEQRP APASAPVYKT QQVPRNRAQR ASVKKRPTNT GGSKTLAAFN LSLQVEKSDI EEFFKEAGQV
201: VDVRFGRTND GDDRFLGFGM VEFATAGEAL KALEFHGRPL LGCQIRLEAS HARGQRPAYT PQSRQRSGVG LPKEDIKSSL LKRVSVPTDH ETGASKRHRE
301: CV
001: MGKSKSATKV VAEIKATKPL KKGKREPEDD IDTKVSLKKQ KKDVIAAVQK EKAVKKVPKK VESSDDSDSE SEEEEKAKKV PAKKAASSSD ESSDDSSSDD
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE
Arabidopsis Description
NUCL1Nucleolin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.