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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • nucleus 2
  • mitochondrion 2
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_05s0020g00100.t01 Wine grape mitochondrion 17.22 39.1
GSMUA_Achr10P... Banana nucleus 24.5 25.43
GSMUA_Achr11P... Banana nucleus 23.84 23.76
CDX92253 Canola nucleus 19.54 20.92
CDX91456 Canola mitochondrion 8.61 18.31
CDX93706 Canola nucleus 29.47 17.76
CDY60074 Canola nucleus 25.83 17.73
CDX91465 Canola nucleus 10.6 17.3
CDY59893 Canola nucleus 29.14 17.22
CDY65178 Canola nucleus 26.16 16.39
CDX91457 Canola mitochondrion 2.65 15.09
CDX90410 Canola nucleus 9.93 14.08
CDY16474 Canola nucleus 22.52 14.05
CDY54454 Canola nucleus 10.93 14.04
CDX77274 Canola nucleus 26.16 13.64
CDX91454 Canola nucleus 9.93 13.33
CDX91458 Canola nucleus 9.93 13.27
CDY36208 Canola endoplasmic reticulum, mitochondrion, nucleus, vacuole 22.19 12.98
CDX91450 Canola nucleus 8.94 12.98
TraesCS7B01G183600.1 Wheat nucleus 24.17 12.94
CDX93704 Canola nucleus 28.48 12.61
TraesCS7D01G289200.1 Wheat nucleus 23.51 12.41
Solyc02g014310.2.1 Tomato nucleus 25.83 12.36
PGSC0003DMT400003013 Potato nucleus 25.17 12.14
Os08t0192900-01 Rice nucleus 22.85 12.06
CDY26273 Canola nucleus 8.61 12.04
CDX99340 Canola nucleus 24.83 12.0
HORVU7Hr1G068630.2 Barley nucleus 22.52 11.89
CDX92252 Canola nucleus 23.51 11.81
CDY09605 Canola mitochondrion, plastid 7.95 11.71
TraesCS7A01G286200.1 Wheat nucleus 23.51 11.68
CDY09156 Canola cytosol 11.92 11.61
Os04t0620700-01 Rice nucleus 26.82 11.46
EER94106 Sorghum nucleus 24.17 10.99
CDY70171 Canola cytosol, nucleus, plastid 8.61 10.61
TraesCS2B01G486000.4 Wheat nucleus 25.17 10.43
CDX99339 Canola nucleus 20.2 10.41
TraesCS2D01G465200.1 Wheat nucleus 25.17 10.4
EES14672 Sorghum nucleus 21.85 10.2
TraesCS2A01G464300.3 Wheat nucleus 24.5 10.11
Zm00001d032748_P001 Maize nucleus 24.5 9.64
KRH40855 Soybean nucleus 21.52 9.48
Zm00001d049399_P001 Maize plasma membrane 21.85 9.43
CDX90296 Canola nucleus 9.6 9.21
KRG89142 Soybean nucleus 20.86 9.13
CDY12105 Canola plastid 9.6 8.29
Protein Annotations
Gene3D:3.30.70.330MapMan:35.1GO:A0A078G1M4UniProt:A0A078G1M4EnsemblPlants:CDY20455ProteinID:CDY20455
ProteinID:CDY20455.1GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488EnsemblPlantsGene:GSBRNA2T00012541001
InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfPFAM:PF00076PFscan:PS50102PANTHER:PTHR23003
PANTHER:PTHR23003:SF3InterPro:RBD_domain_sfInterPro:RRM_domSMART:SM00360SUPFAM:SSF54928UniParc:UPI0004EE8B55
Description
BnaC04g05890DBnaC04g05890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1M4]
Coordinates
chrLK032108:-:230858..232592
Molecular Weight (calculated)
33818.4 Da
IEP (calculated)
10.784
GRAVY (calculated)
-0.602
Length
302 amino acids
Sequence
(BLAST)
001: MILLDKAKRD FYDIKRKAWR NPPAPIPVYK TQQGPRNRAQ RASFFFLFHA QPTNTGGSKT LAALNLSLQV KRSDVEEFFK EAGQVVDVRF GKTEYGRFLG
101: FGMVEFATAR EAQKALEFHG RRLLGCQIRL GISHESEQRP APASAPVYKT QQVPRNRAQR ASVKKRPTNT GGSKTLAAFN LSLQVEKSDI EEFFKEAGQV
201: VDVRFGRTND GDDRFLGFGM VEFATAGEAL KALEFHGRPL LGCQIRLEAS HARGQRPAYT PQSRQRSGVG LPKEDIKSSL LKRVSVPTDH ETGASKRHRE
301: CV
Best Arabidopsis Sequence Match ( AT1G48920.1 )
(BLAST)
001: MGKSKSATKV VAEIKATKPL KKGKREPEDD IDTKVSLKKQ KKDVIAAVQK EKAVKKVPKK VESSDDSDSE SEEEEKAKKV PAKKAASSSD ESSDDSSSDD
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE
Arabidopsis Description
NUCL1Nucleolin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.