Factsheet for Os04t0620700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 23777608
golgi: 25047511
nucleus: 26035336

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94106	Sorghum	nucleus	54.6	58.13
GSMUA_Achr10P...	Banana	nucleus	23.62	57.39
Os08t0192900-01	Rice	nucleus	44.98	55.59
GSMUA_Achr11P...	Banana	nucleus	23.62	55.12
Zm00001d032748_P001	Maize	nucleus	54.6	50.26
VIT_05s0020g00100.t01	Wine grape	mitochondrion	9.05	48.12
TraesCS2D01G465200.1	Wheat	nucleus	49.51	47.88
TraesCS2B01G486000.4	Wheat	nucleus	48.66	47.19
TraesCS2A01G464300.3	Wheat	nucleus	47.38	45.77
CDY65178	Canola	nucleus	31.12	45.64
Bra032269.1-P	Field mustard	nucleus	28.01	45.0
CDY60074	Canola	nucleus	28.01	45.0
Bra018764.1-P	Field mustard	nucleus	30.55	43.2
CDY59893	Canola	nucleus	30.69	42.47
CDX93706	Canola	nucleus	29.84	42.12
AT1G48920.1	Thale cress	nucleus	32.53	41.29
PGSC0003DMT400003013	Potato	nucleus	36.49	41.21
Bra022338.1-P	Field mustard	nucleus	14.71	39.85
Solyc02g014310.2.1	Tomato	nucleus	35.22	39.46
Bra014162.1-P	Field mustard	nucleus	32.25	39.24
CDX77274	Canola	nucleus	32.11	39.21
VIT_01s0011g02180.t01	Wine grape	nucleus	38.47	38.31
CDX92253	Canola	nucleus	15.13	37.94
Bra018762.1-P	Field mustard	nucleus	32.67	35.81
CDY16474	Canola	nucleus	23.62	34.5
CDX92252	Canola	nucleus	28.85	33.94
Bra022337.1-P	Field mustard	nucleus	28.57	33.78
KRH29160	Soybean	nucleus	35.64	33.69
CDX99340	Canola	nucleus	29.56	33.44
CDX93704	Canola	nucleus	32.25	33.43
KRH24189	Soybean	nucleus	34.23	32.53
AT3G18610.1	Thale cress	nucleus	29.0	32.23
CDY20455	Canola	nucleus	11.46	26.82
CDX99339	Canola	nucleus	20.93	25.26
KRH40855	Soybean	nucleus	22.21	22.89
KRG89142	Soybean	nucleus	20.65	21.16
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	12.45	17.05

Protein Annotations

MapMan:17.1.1.1.1	Gene3D:3.30.70.330	EntrezGene:4337032	EMBL:AK103446	ProteinID:BAF15823.1	ProteinID:BAS91061.1
ProteinID:BAS91062.1	ProteinID:CAD41755.2	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504
InterPro:IPR012677	InterPro:NUCL_RRM1	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os04g0620700	EnsemblPlants:Os04t0620700-01	PFAM:PF00076
PFscan:PS50102	UniProt:Q7XTT4	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI000021C87E	RefSeq:XP_015636765.1	SEG:seg	:	:	:

Description

nucleolin 1Nucleolin-like protein, Salt stress response (Os04t0620700-01);Hypothetical conserved gene. (Os04t0620700-02)

Coordinates

chr4:+:31544124..31551152

Molecular Weight (calculated)

75256.9 Da

IEP (calculated)

4.581

GRAVY (calculated)

-1.301

Length

707 amino acids

Sequence
(BLAST)

001: MGKSSKKSAV EVAPTSVSVS EGKSGKKGKR NAEDEIEKAV SAKKQKTVRE KVVPSKEEAK KVKKQPPPKK VESSSSEEDS SESEEEVKAQ PKKTVQPKKA
101: AQPAKEESSD DSSDDSSSDD EPAKKPVARP NKAALSTNSS SSDDSSDESL SDDEPVKKPA APLKKPVALA TNGSKKVETD SSSSDSSSDE ESDEDDKKTA
201: APVKKPSVAA IQKKTQESDS SDSDSDSESD EDVPTKAPAV AKKKEESSES SDSESDSDSD DEAAAVKKEE ESSDSSDSDS ESESDSDEPA KPTIPAKRPL
301: TKDTKKGQSK DESEDSSDES SEESGDEPPQ KKIKDSTTSG TTKPSPKATK KEISSDDESD EDDSSDESSD EDVKQKQTQA KKQAPVAQES SSSDESSEED
401: SDMESDEPAK TPQKKETAVS VGSNKSATKP GQEEPKTPAS NQNQATGSKT LFVGNLPYNV EQEQVKQFFQ EAGEVVDIRF STFEDGNFRG FGHVEFATAE
501: AAKKALELAG HDLMGRPVRL DLARERGAYT PGSGRDNSSF KKPAQSSGNT IFIKGFDTSL DIHQIRNSLE EHFGSCGEIT RVSIPKDYET GASKGMAYMD
601: FADNGSLSKA YELNGSDLGG YSLYVDEARP RPDNNREGGF SGGRDFNSSG RGGRRGGRGD GSRGRGDRGR GRGFGRGDRG HGGRGTPFKQ SAGTPSAGKK
701: TTFGDDD

Best Arabidopsis Sequence Match ( AT3G18610.1 )
(BLAST)

001: MGKSSKKSVT EVETPASMTK PLKKGKRDAE EDLDMQVTKK QKKELIDVVQ KEKAEKTVPK KVESSSSDAS DSDEEEKTKE TPSKLKDESS SEEEDDSSSD
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPVKKQP AVLEKAKIES SSSDDDSSSD EETVPMKKQT
201: AVLEKAKAES SSSDDGSSSD EEPTPAKKEP IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS
301: EEDSDEEESD DEKPPTKKAK VSSKTSKQES SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI
401: ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR
501: SHFSKCGEVT RVHVPTDRET GASRGFAYID LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS
601: DRGAPRGRFS TRGRGPSKPS VMESSKGTKT VFNDEE

Arabidopsis Description

NUCL2Nucleolin 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEP5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.