CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29160	Soybean	nucleus	80.78	80.35
GSMUA_Achr10P...	Banana	nucleus	22.98	58.76
GSMUA_Achr11P...	Banana	nucleus	23.66	58.09
Bra032269.1-P	Field mustard	nucleus	26.75	45.23
Bra018764.1-P	Field mustard	nucleus	30.11	44.8
TraesCS7B01G183600.1	Wheat	nucleus	32.53	42.91
HORVU7Hr1G068630.2	Barley	nucleus	32.8	42.66
TraesCS7D01G289200.1	Wheat	nucleus	32.53	42.31
Solyc02g014310.2.1	Tomato	nucleus	35.35	41.68
Bra022338.1-P	Field mustard	nucleus	14.38	41.0
PGSC0003DMT400003013	Potato	nucleus	33.74	40.1
Bra014162.1-P	Field mustard	nucleus	30.24	38.73
Os08t0192900-01	Rice	nucleus	29.7	38.64
TraesCS7A01G286200.1	Wheat	nucleus	31.05	37.99
EES14672	Sorghum	nucleus	31.85	36.63
AT1G48920.1	Thale cress	nucleus	27.42	36.62
Bra018762.1-P	Field mustard	nucleus	30.51	35.19
EER94106	Sorghum	nucleus	31.18	34.94
Zm00001d049399_P001	Maize	plasma membrane	32.53	34.57
Os04t0620700-01	Rice	nucleus	32.53	34.23
TraesCS2D01G465200.1	Wheat	nucleus	33.6	34.2
Bra022337.1-P	Field mustard	nucleus	27.42	34.11
TraesCS2B01G486000.4	Wheat	nucleus	33.2	33.88
TraesCS2A01G464300.3	Wheat	nucleus	32.93	33.47
AT3G18610.1	Thale cress	nucleus	28.09	32.86
Zm00001d032748_P001	Maize	nucleus	33.2	32.16
KRH40855	Soybean	nucleus	22.18	24.05
KRG89142	Soybean	nucleus	21.51	23.19

Protein Annotations

EntrezGene:100779929	MapMan:17.1.1.1.1	Gene3D:3.30.70.330	EMBL:ACUP02007172	ncoils:Coil	EnsemblPlantsGene:GLYMA_12G027400
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1LPJ9	InterPro:IPR000504
InterPro:IPR012677	EnsemblPlants:KRH24189	ProteinID:KRH24189	ProteinID:KRH24189.1	InterPro:NUCL_RRM2	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23236	PANTHER:PTHR23236:SF11	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000233D5F5	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:+:1978277..1983998

Molecular Weight (calculated)

77573.6 Da

IEP (calculated)

5.100

GRAVY (calculated)

-1.134

Length

744 amino acids

Sequence
(BLAST)

001: MGKSSKKSAL KVDAVPAVVP PSKSAKKGGK RQAQDEIEKQ LSAKKQKINE VAQKQKEAKV QKKESSSDDS SSESEDEKPA PKSAVLSKKI PAKNGAAPPK
101: KGKLASSSSE DDSSDEDGVR AKKPQKMVAE KQKNGATVQK KKVESSSDDS SSESEAEKPA VKATVPSKKT PTKNGNLSTP AKKGKAASSS SSSDSSEDDS
201: SDEDEVATKK QTKEVKVQKG KEESSSDDSS SESEDEKPAA KVAVPPKNQS AKNGTLSTPA EKGKPAASSS SSESSDDDSD EDEAPKSKVA PAAGKNVPAS
301: TKITQPSESS ESDSDSSSDE DKNKKKPATA KLPALSVAPA LKVESSDDES SESSDEDNDA KPAVTDVSKP SALAKKKVDS SDSDDSSSDE DKGKMDIDDD
401: SSDESEEPQK KKTVKNPKES SDSSEEDSED ESEEEPSKTP QKRDRDVEMV DAASSGKKAP KTPVTPKEET GASKTLFVGN LPFSVERADV EDFFKDAGEV
501: VDVRFATDDT GKFKGFGHVE FATAAAAQKA LGLNGQQLFN RELRLDLARE RGAYTPNSSN WNNSSQKSGR GQSQTVFVRG FDTSLGEDEI RGSLQEHFGS
601: CGDITRVSIP KDYESGAVKG FAYVDFSDVD SMGKALELHE TELGGYTLTV DEAKPRDNQG SGGRGAGGRS GGGRFGGRSG GGGGGRFGGR GGGGRFGGSG
701: GGGRFGGSGG GRFGGRGGGG RGRGNRPNLA AEGTGKKTKF ADDE

Best Arabidopsis Sequence Match ( AT3G18610.1 )
(BLAST)

001: MGKSSKKSVT EVETPASMTK PLKKGKRDAE EDLDMQVTKK QKKELIDVVQ KEKAEKTVPK KVESSSSDAS DSDEEEKTKE TPSKLKDESS SEEEDDSSSD
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPVKKQP AVLEKAKIES SSSDDDSSSD EETVPMKKQT
201: AVLEKAKAES SSSDDGSSSD EEPTPAKKEP IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS
301: EEDSDEEESD DEKPPTKKAK VSSKTSKQES SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI
401: ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR
501: SHFSKCGEVT RVHVPTDRET GASRGFAYID LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS
601: DRGAPRGRFS TRGRGPSKPS VMESSKGTKT VFNDEE

Arabidopsis Description

NUCL2Nucleolin 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEP5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.