Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_05s0020g00100.t01 | Wine grape | mitochondrion | 10.53 | 50.38 |
| Bra022338.1-P | Field mustard | nucleus | 18.87 | 45.98 |
| CDX92252 | Canola | nucleus | 43.24 | 45.76 |
| Bra022337.1-P | Field mustard | nucleus | 41.98 | 44.65 |
| CDX99340 | Canola | nucleus | 43.24 | 44.0 |
| GSMUA_Achr10P... | Banana | nucleus | 19.81 | 43.3 |
| AT1G48920.1 | Thale cress | nucleus | 37.89 | 43.27 |
| CDX92253 | Canola | nucleus | 18.87 | 42.55 |
| GSMUA_Achr11P... | Banana | nucleus | 19.97 | 41.91 |
| TraesCS7B01G183600.1 | Wheat | nucleus | 31.6 | 35.64 |
| HORVU7Hr1G068630.2 | Barley | nucleus | 31.6 | 35.14 |
| Os08t0192900-01 | Rice | nucleus | 31.6 | 35.14 |
| TraesCS7D01G289200.1 | Wheat | nucleus | 30.82 | 34.27 |
| PGSC0003DMT400003013 | Potato | nucleus | 33.65 | 34.19 |
| Solyc02g014310.2.1 | Tomato | nucleus | 32.39 | 32.65 |
| VIT_01s0011g02180.t01 | Wine grape | nucleus | 36.32 | 32.54 |
| TraesCS7A01G286200.1 | Wheat | nucleus | 29.4 | 30.76 |
| EER94106 | Sorghum | nucleus | 30.35 | 29.07 |
| Os04t0620700-01 | Rice | nucleus | 32.23 | 29.0 |
| TraesCS2B01G486000.4 | Wheat | nucleus | 33.18 | 28.94 |
| TraesCS2D01G465200.1 | Wheat | nucleus | 33.02 | 28.73 |
| KRH29160 | Soybean | nucleus | 33.49 | 28.48 |
| EES14672 | Sorghum | nucleus | 28.77 | 28.28 |
| KRH24189 | Soybean | nucleus | 32.86 | 28.09 |
| Zm00001d049399_P001 | Maize | plasma membrane | 30.82 | 28.0 |
| TraesCS2A01G464300.3 | Wheat | nucleus | 31.29 | 27.19 |
| Zm00001d032748_P001 | Maize | nucleus | 32.39 | 26.82 |
| AT1G72800.1 | Thale cress | nucleus | 13.52 | 25.67 |
| AT1G73490.2 | Thale cress | nucleus | 10.38 | 25.38 |
| CDX99339 | Canola | nucleus | 23.27 | 25.26 |
| KRH40855 | Soybean | nucleus | 18.87 | 17.49 |
| KRG89142 | Soybean | nucleus | 18.55 | 17.1 |
Protein Annotations
| MapMan:17.1.1.1.1 | Gene3D:3.30.70.330 | EntrezGene:821392 | ProteinID:AEE76122.1 | ArrayExpress:AT3G18610 | EnsemblPlantsGene:AT3G18610 |
| RefSeq:AT3G18610 | TAIR:AT3G18610 | RefSeq:AT3G18610-TAIR-G | EnsemblPlants:AT3G18610.1 | TAIR:AT3G18610.1 | Unigene:At.53375 |
| ProteinID:BAB02219.1 | ncoils:Coil | EMBL:DQ446672 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003682 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006364 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0031491 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_188491.1 | InterPro:NUCL_RRM1 | InterPro:NUCL_RRM2 |
| InterPro:Nucleotide-bd_a/b_plait_sf | Symbol:PARLL1 | PFAM:PF00076 | PO:PO:0000005 | PO:PO:0000293 | PO:PO:0020094 |
| PFscan:PS50102 | UniProt:Q1PEP5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000016344B | SEG:seg | : | : | : | : |
Description
NUCL2Nucleolin 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEP5]
Coordinates
chr3:-:6404083..6407831
Molecular Weight (calculated)
68990.0 Da
IEP (calculated)
4.746
GRAVY (calculated)
-1.279
Length
636 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKSSKKSVT EVETPASMTK PLKKGKRDAE EDLDMQVTKK QKKELIDVVQ KEKAEKTVPK KVESSSSDAS DSDEEEKTKE TPSKLKDESS SEEEDDSSSD
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPVKKQP AVLEKAKIES SSSDDDSSSD EETVPMKKQT
201: AVLEKAKAES SSSDDGSSSD EEPTPAKKEP IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS
301: EEDSDEEESD DEKPPTKKAK VSSKTSKQES SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI
401: ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR
501: SHFSKCGEVT RVHVPTDRET GASRGFAYID LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS
601: DRGAPRGRFS TRGRGPSKPS VMESSKGTKT VFNDEE
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPVKKQP AVLEKAKIES SSSDDDSSSD EETVPMKKQT
201: AVLEKAKAES SSSDDGSSSD EEPTPAKKEP IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS
301: EEDSDEEESD DEKPPTKKAK VSSKTSKQES SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI
401: ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR
501: SHFSKCGEVT RVHVPTDRET GASRGFAYID LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS
601: DRGAPRGRFS TRGRGPSKPS VMESSKGTKT VFNDEE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.