Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU82679 | Sorghum | nucleus | 13.08 | 20.36 |
| CDX90296 | Canola | nucleus | 23.08 | 19.05 |
| CDY12105 | Canola | plastid | 23.85 | 17.71 |
| AT1G72800.1 | Thale cress | nucleus | 16.54 | 12.84 |
| AT3G18610.1 | Thale cress | nucleus | 25.38 | 10.38 |
| AT1G48920.1 | Thale cress | nucleus | 20.77 | 9.69 |
| Bra010724.1-P | Field mustard | nucleus | 25.38 | 7.66 |
| Zm00001d018553_P001 | Maize | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 8.85 | 7.64 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | EntrezGene:843684 | ProteinID:AAG30965.1 | ProteinID:AEE35468.1 | ProteinID:AEE35469.1 |
| EMBL:AK316679 | ArrayExpress:AT1G73490 | EnsemblPlantsGene:AT1G73490 | RefSeq:AT1G73490 | TAIR:AT1G73490 | RefSeq:AT1G73490-TAIR-G |
| EnsemblPlants:AT1G73490.2 | TAIR:AT1G73490.2 | EMBL:BT029462 | ncoils:Coil | UniProt:F4HQ94 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0008150 | InterPro:IPR000504 | InterPro:IPR012677 |
| RefSeq:NP_001185392.1 | RefSeq:NP_177491.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50102 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SUPFAM:SSF54928 | UniParc:UPI0001E92AE3 | SEG:seg | : | : | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HQ94]
Coordinates
chr1:-:27633260..27634964
Molecular Weight (calculated)
29843.6 Da
IEP (calculated)
9.467
GRAVY (calculated)
-0.676
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRRLKKCST STDVESVHDV SKVTDPLQKA KRELDNVEIK EKQKKQKNQN ETSEKQETKK FSTVYEKFND TIKELDRVSG TCPIRPAIPF TPPKEKVEPI
101: YHNECNFDDK AHLGVSDSAL FVQGFDTSHP RHEIKTALWN HFSSCGKVYL IYVPIACSTG ASVGYAFIDM KNETKGLTLN GSHLGGRKID VMFAIDREEF
201: YFSSNLKHCQ RCRNYRPWLV LKAMSDACFE YHQRIKPRIV GTPHSKIGRF TAIIGRRSYS
101: YHNECNFDDK AHLGVSDSAL FVQGFDTSHP RHEIKTALWN HFSSCGKVYL IYVPIACSTG ASVGYAFIDM KNETKGLTLN GSHLGGRKID VMFAIDREEF
201: YFSSNLKHCQ RCRNYRPWLV LKAMSDACFE YHQRIKPRIV GTPHSKIGRF TAIIGRRSYS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.