CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12105	Canola	plastid	72.7	65.43
CDX91465	Canola	nucleus	20.63	35.14
CDX91450	Canola	nucleus	21.59	32.69
CDX91454	Canola	nucleus	21.59	30.22
CDX91458	Canola	nucleus	21.27	29.65
CDY54454	Canola	nucleus	21.9	29.36
CDY09605	Canola	mitochondrion, plastid	18.73	28.78
CDY26273	Canola	nucleus	19.68	28.7
CDX90410	Canola	nucleus	18.1	26.76
CDX91456	Canola	mitochondrion	11.43	25.35
OQU82679	Sorghum	nucleus	13.33	25.15
CDY70171	Canola	cytosol, nucleus, plastid	19.37	24.9
AT1G73490.2	Thale cress	nucleus	19.05	23.08
CDY09156	Canola	cytosol	22.22	22.58
Bra010724.1-P	Field mustard	nucleus	46.03	16.82
CDX92253	Canola	nucleus	13.97	15.6
Zm00001d018553_P001	Maize	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	12.06	12.62
CDY60074	Canola	nucleus	17.46	12.5
CDY65178	Canola	nucleus	18.41	12.03
CDX91457	Canola	mitochondrion	1.9	11.32
CDX77274	Canola	nucleus	19.68	10.71
CDY59893	Canola	nucleus	16.51	10.18
CDY20455	Canola	nucleus	9.21	9.6
CDX93706	Canola	nucleus	14.92	9.38
CDY16474	Canola	nucleus	13.33	8.68
CDX99339	Canola	nucleus	15.56	8.36
CDX99340	Canola	nucleus	15.24	7.68
CDX92252	Canola	nucleus	14.29	7.49
CDX93704	Canola	nucleus	15.56	7.18
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	8.89	5.43

Protein Annotations

EnsemblPlants:CDX90296	EnsemblPlantsGene:GSBRNA2T00150873001	Gene3D:3.30.70.330	GO:A0A078DM02	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
ncoils:Coil	PANTHER:PTHR43987	PFAM:PF00076	PFscan:PS50102	ProteinID:CDX90296	ProteinID:CDX90296.1
SEG:seg	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EF30D1	MapMan:35.2	:

Description

BnaA08g16880D

Coordinates

chrLK031862:+:1118060..1123336

Molecular Weight (calculated)

36435.9 Da

IEP (calculated)

9.677

GRAVY (calculated)

-0.684

Length

315 amino acids

Sequence
(BLAST)

001: MGAANWGAKG FIMMERNKCL IKSVVEVKIV TTPEIRVGDS EILGTPKNQQ KYKRRKKVDQ DTLLKPKKLQ KHKLCKKKQK KVTTTTEPSE INSDDPEALV
101: KPQKPERLKK IVDELSNRLD EMTEIVKKLK KNSDLLEEEN NNTPKEKVVD HECYFESEDA DFKNRRTIFV LGFDCSFPRD EIKRTLIKHF SSCGEVSRVY
201: IPFHCDTGSP MGFAFISMGN PDKALTLNGS YLDGMRLEVT MATKRSEYYG YTNHRGCQRC GIASAKRLAK RFYDRTRIRI PLGTSFFSFI FESLKENNSY
301: ICDYFYRLHS VPSDF

Best Arabidopsis Sequence Match ( AT1G73490.2 )
(BLAST)

001: MDRRLKKCST STDVESVHDV SKVTDPLQKA KRELDNVEIK EKQKKQKNQN ETSEKQETKK FSTVYEKFND TIKELDRVSG TCPIRPAIPF TPPKEKVEPI
101: YHNECNFDDK AHLGVSDSAL FVQGFDTSHP RHEIKTALWN HFSSCGKVYL IYVPIACSTG ASVGYAFIDM KNETKGLTLN GSHLGGRKID VMFAIDREEF
201: YFSSNLKHCQ RCRNYRPWLV LKAMSDACFE YHQRIKPRIV GTPHSKIGRF TAIIGRRSYS

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HQ94]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.