CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus, vacuole

Predictor Summary:

nucleus 2
vacuole 2
extracellular 1
endoplasmic reticulum 2
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g00100.t01	Wine grape	mitochondrion	8.53	33.08
CDY20455	Canola	nucleus	12.98	22.19
GSMUA_Achr10P...	Banana	nucleus	12.02	21.31
GSMUA_Achr11P...	Banana	nucleus	12.4	21.12
CDY60074	Canola	nucleus	15.89	18.64
CDX93706	Canola	nucleus	17.44	17.96
CDX92253	Canola	nucleus	9.69	17.73
CDY59893	Canola	nucleus	17.25	17.42
CDY16474	Canola	nucleus	15.89	16.94
CDY65178	Canola	nucleus	15.5	16.6
Os08t0192900-01	Rice	nucleus	15.89	14.34
CDX77274	Canola	nucleus	15.89	14.16
TraesCS7B01G183600.1	Wheat	nucleus	15.12	13.83
CDX93704	Canola	nucleus	17.83	13.49
HORVU7Hr1G068630.2	Barley	nucleus	14.73	13.29
TraesCS7D01G289200.1	Wheat	nucleus	14.73	13.29
Solyc02g014310.2.1	Tomato	nucleus	15.7	12.84
EER94106	Sorghum	nucleus	16.28	12.65
Os04t0620700-01	Rice	nucleus	17.05	12.45
CDX90410	Canola	nucleus	5.04	12.21
CDX92252	Canola	nucleus	14.15	12.15
TraesCS7A01G286200.1	Wheat	nucleus	14.15	12.01
PGSC0003DMT400003013	Potato	nucleus	14.34	11.82
CDX99340	Canola	nucleus	14.15	11.68
TraesCS2A01G464300.3	Wheat	nucleus	16.47	11.61
TraesCS2B01G486000.4	Wheat	nucleus	16.28	11.52
TraesCS2D01G465200.1	Wheat	nucleus	16.28	11.49
Zm00001d049399_P001	Maize	plasma membrane	15.12	11.14
EES14672	Sorghum	nucleus	13.57	10.82
Zm00001d032748_P001	Maize	nucleus	15.7	10.55
CDX91465	Canola	nucleus	3.68	10.27
CDY54454	Canola	nucleus	4.65	10.21
CDX91458	Canola	nucleus	4.46	10.18
CDX91456	Canola	mitochondrion	2.71	9.86
CDY26273	Canola	nucleus	4.07	9.72
KRG89142	Soybean	nucleus	12.98	9.71
KRH40855	Soybean	nucleus	12.79	9.62
CDX91450	Canola	nucleus	3.88	9.62
CDX91454	Canola	nucleus	4.07	9.33
CDX99339	Canola	nucleus	10.47	9.22
CDY09156	Canola	cytosol	5.43	9.03
CDX90296	Canola	nucleus	5.43	8.89
CDY09605	Canola	mitochondrion, plastid	3.49	8.78
CDY70171	Canola	cytosol, nucleus, plastid	4.07	8.57
CDY12105	Canola	plastid	5.43	8.0
CDX91457	Canola	mitochondrion	0.78	7.55

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	Gene3D:3.30.40.10	Gene3D:3.30.70.330	MapMan:35.1
GO:A0A078HH85	UniProt:A0A078HH85	EnsemblPlants:CDY36208	ProteinID:CDY36208	ProteinID:CDY36208.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00060118001	InterPro:IPR000504	InterPro:IPR008974	InterPro:IPR012677
InterPro:IPR013010	InterPro:IPR013083	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PFscan:PS51081
PANTHER:PTHR10315	PANTHER:PTHR10315:SF43	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:SINA-like	SMART:SM00360
SUPFAM:SSF49599	SUPFAM:SSF54928	TMHMM:TMhelix	InterPro:TRAF-like	UniPathway:UPA00143	UniParc:UPI0004EE1C6E
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

BnaC06g27520DBnaC06g27520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HH85]

Coordinates

chrLK032370:-:26598..31906

Molecular Weight (calculated)

58590.2 Da

IEP (calculated)

4.595

GRAVY (calculated)

-0.432

Length

516 amino acids

Sequence
(BLAST)

001: MLVPYYIVGQ KLRLKMVICM RRLEEEKEVE EDEAEEEKTH QDESFFLRLS PLPSKPSSHF SFLKIFSMES TNIVFFFSVS NLFSCFFYKS QLNVFVLLIL
101: TIVFSFSFVS SGQRELSDEF NTKLNLENQN EESDEKMHME ADYSSSSDSS SDDSDSEEEE GPMIPQPQPQ PPRSTTTGGS RTLFAGNLAL QVKKSDIKEF
201: FREAGEVVDV KFGMGRDDGS FRGFGHILFA SPVEAQMALG FQGRTLLGRQ IRLDMALESS ETRETASVDG YEVIPEARSG TLLDLDLLDC PVCCQALTQH
301: VFQCDNGHIA CSSCCLKLRN KCPVCALPIG NNRCRILERV FSYGKELAHE KECGFALCYC PAPNCNYAGV YKDLYTHYDA YHTDILSRFV CGTLHNPCMS
401: TGSKISVLQE YGGGPLFGST EMNRIQKVRF QTPQENFMSI PSYLNPQAIV QNLRICIRRL EEEDGEEEEE ETVDDLLIRI RQLEEEEEAV EADDDNNVRR
501: STREKKANSK YQNKVK

Best Arabidopsis Sequence Match ( AT1G66620.1 )
(BLAST)

001: MSGEASTSRR KRQRVPSSVE SVENGGGDAV ARSGTLFELD LLDCPICCHA LTSPIFQCDN GHIACSSCCT KLRNKCPSCA LPIGNFRSRI MERVVEAVMV
101: TCPNVKHGCT EKFSYGKELI HEKDCRFALC YCPAPNCNYS GVYKDLYSHF YVNHYDTWNQ IGCGNFAGAW LRISEKILVL QYGQGPLIAV QCFKETQGMY
201: VTVNCIAPCA PGVGELSFEL SYKMPMGGNS TMMFKSEEMN RIQKVSFQTP EKDFMLVPYY FLGDFSTLKM EICIRKLKKD EEEADEDEES EEEEDDDDDD
301: DDDDEEEDAD EEE

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.