Factsheet for VIT_05s0020g00100.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	48.12	21.99
GSMUA_Achr11P...	Banana	nucleus	48.12	21.12
Bra022338.1-P	Field mustard	nucleus	36.84	18.77
CDY20455	Canola	nucleus	39.1	17.22
Bra032269.1-P	Field mustard	nucleus	48.87	14.77
VIT_01s0011g02180.t01	Wine grape	nucleus	69.17	12.96
Bra018764.1-P	Field mustard	nucleus	45.11	12.0
AT1G48920.1	Thale cress	nucleus	46.62	11.13
PGSC0003DMT400003013	Potato	nucleus	51.88	11.02
TraesCS7B01G183600.1	Wheat	nucleus	46.62	10.99
Bra014162.1-P	Field mustard	nucleus	47.37	10.84
TraesCS7D01G289200.1	Wheat	nucleus	46.62	10.84
HORVU7Hr1G068630.2	Barley	nucleus	45.86	10.66
Bra022337.1-P	Field mustard	nucleus	47.37	10.54
AT3G18610.1	Thale cress	nucleus	50.38	10.53
TraesCS7A01G286200.1	Wheat	nucleus	47.37	10.36
Solyc02g014310.2.1	Tomato	nucleus	48.87	10.3
EER94106	Sorghum	nucleus	48.87	9.79
Os08t0192900-01	Rice	nucleus	40.6	9.44
Bra018762.1-P	Field mustard	nucleus	44.36	9.15
Os04t0620700-01	Rice	nucleus	48.12	9.05
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	33.08	8.53
EES14672	Sorghum	nucleus	41.35	8.5
TraesCS2D01G465200.1	Wheat	nucleus	45.86	8.34
TraesCS2B01G486000.4	Wheat	nucleus	45.11	8.23
Zm00001d032748_P001	Maize	nucleus	47.37	8.2
TraesCS2A01G464300.3	Wheat	nucleus	45.11	8.2
Zm00001d049399_P001	Maize	plasma membrane	39.85	7.57
KRH40855	Soybean	nucleus	36.84	7.14
KRG89142	Soybean	nucleus	36.84	7.1

Protein Annotations

MapMan:17.1.1.1.1	Gene3D:3.30.70.330	ProteinID:CCB50252	ProteinID:CCB50252.1	UniProt:F6HDX7	EMBL:FN595749
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
InterPro:NUCL_RRM1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44110	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00015CE424	ArrayExpress:VIT_05s0020g00100	EnsemblPlantsGene:VIT_05s0020g00100
EnsemblPlants:VIT_05s0020g00100.t01	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:1995087..1995690

Molecular Weight (calculated)

14510.3 Da

IEP (calculated)

10.767

GRAVY (calculated)

-0.556

Length

133 amino acids

Sequence
(BLAST)

001: MLSRLIKKSG KKAPKTPATP QVQSTGSKTL FVSNLSFSIQ KEDVEHFFKD AGEVVDVRFS SDADGRFKGF GHVEFATPEA AQKALKVNGK DLLGRAVRLD
101: LARKRGAYTP YNGKESNSFQ KGGSQAQTIF VRG

Best Arabidopsis Sequence Match ( AT3G18610.1 )
(BLAST)

001: MGKSSKKSVT EVETPASMTK PLKKGKRDAE EDLDMQVTKK QKKELIDVVQ KEKAEKTVPK KVESSSSDAS DSDEEEKTKE TPSKLKDESS SEEEDDSSSD
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPVKKQP AVLEKAKIES SSSDDDSSSD EETVPMKKQT
201: AVLEKAKAES SSSDDGSSSD EEPTPAKKEP IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS
301: EEDSDEEESD DEKPPTKKAK VSSKTSKQES SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI
401: ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR
501: SHFSKCGEVT RVHVPTDRET GASRGFAYID LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS
601: DRGAPRGRFS TRGRGPSKPS VMESSKGTKT VFNDEE

Arabidopsis Description

NUCL2Nucleolin 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEP5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.