Factsheet for GSMUA_Achr11P14880_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	75.25	78.35
VIT_05s0020g00100.t01	Wine grape	mitochondrion	21.12	48.12
Bra022338.1-P	Field mustard	nucleus	31.35	36.4
CDY60074	Canola	nucleus	49.17	33.86
Bra032269.1-P	Field mustard	nucleus	49.17	33.86
CDX92253	Canola	nucleus	31.02	33.33
CDY65178	Canola	nucleus	48.18	30.29
Os08t0192900-01	Rice	nucleus	56.11	29.72
TraesCS7B01G183600.1	Wheat	nucleus	51.16	27.48
Bra018764.1-P	Field mustard	nucleus	45.21	27.4
HORVU7Hr1G068630.2	Barley	nucleus	51.16	27.1
TraesCS7D01G289200.1	Wheat	nucleus	50.83	26.92
PGSC0003DMT400003013	Potato	nucleus	53.8	26.04
CDX93706	Canola	nucleus	42.9	25.95
VIT_01s0011g02180.t01	Wine grape	nucleus	60.73	25.92
CDX77274	Canola	nucleus	48.84	25.56
TraesCS7A01G286200.1	Wheat	nucleus	51.16	25.49
AT1G48920.1	Thale cress	nucleus	46.53	25.31
Bra014162.1-P	Field mustard	nucleus	48.51	25.3
CDY59893	Canola	nucleus	42.24	25.05
EER94106	Sorghum	nucleus	54.46	24.85
Solyc02g014310.2.1	Tomato	nucleus	50.49	24.25
EES14672	Sorghum	nucleus	51.16	23.96
CDY20455	Canola	nucleus	23.76	23.84
TraesCS2A01G464300.3	Wheat	nucleus	57.43	23.77
TraesCS2D01G465200.1	Wheat	nucleus	57.1	23.67
KRH24189	Soybean	nucleus	58.09	23.66
Os04t0620700-01	Rice	nucleus	55.12	23.62
TraesCS2B01G486000.4	Wheat	nucleus	56.11	23.32
KRH29160	Soybean	nucleus	56.44	22.86
Zm00001d049399_P001	Maize	plasma membrane	51.49	22.29
Zm00001d032748_P001	Maize	nucleus	56.44	22.27
CDY16474	Canola	nucleus	35.31	22.11
Bra018762.1-P	Field mustard	nucleus	44.88	21.09
Bra022337.1-P	Field mustard	nucleus	40.59	20.57
AT3G18610.1	Thale cress	nucleus	41.91	19.97
CDX92252	Canola	nucleus	39.6	19.97
CDX99340	Canola	nucleus	39.93	19.36
CDX93704	Canola	nucleus	43.56	19.35
KRH40855	Soybean	nucleus	36.96	16.33
KRG89142	Soybean	nucleus	36.96	16.23
CDX99339	Canola	nucleus	30.03	15.53
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	21.12	12.4

Protein Annotations

MapMan:17.1.1.1.1	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSMUA_Achr11G14880_001	EnsemblPlants:GSMUA_Achr11P14880_001	EnsemblPlants:GSMUA_Achr11T14880_001	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0RSB8
InterPro:NUCL_RRM1	InterPro:NUCL_RRM2	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23236
PANTHER:PTHR23236:SF11	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000295C152
SEG:seg	:	:	:	:	:

Description

Putative Nucleolin [Source:GMGC_GENE;Acc:GSMUA_Achr11G14880_001]

Coordinates

chr11:-:16292425..16295148

Molecular Weight (calculated)

32316.3 Da

IEP (calculated)

9.514

GRAVY (calculated)

-0.909

Length

303 amino acids

Sequence
(BLAST)

001: MQVKDVKMVD ATPKSEKQIA RKSEMKGPKT PVTSQTQTTG SRTIFVGNLS YNVEQDDVSE FFKVAGEVVD VRMARADDGS FKGFGHVEFA TEEAVQKALE
101: MNGQELFGRA VRLDVARERG SYTPNNGKDN YSHQKGGTGQ SQTIFVRGFD KSLEEDQIRS SLEEHFGSCG ELTRVSIPKD YESGASKGIA YMDFKDQDAF
201: TQALELNGSE LGGYTLTVDE AKPRGDNRDG GWSGGGGRDS AGRSGGRFGG RGSGGRFGGR GGRGDRGGGG RGRGGGGRGR GGTPNRQSMG TASTGKKTTF
301: RDD

Best Arabidopsis Sequence Match ( AT3G18610.1 )
(BLAST)

001: MGKSSKKSVT EVETPASMTK PLKKGKRDAE EDLDMQVTKK QKKELIDVVQ KEKAEKTVPK KVESSSSDAS DSDEEEKTKE TPSKLKDESS SEEEDDSSSD
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPVKKQP AVLEKAKIES SSSDDDSSSD EETVPMKKQT
201: AVLEKAKAES SSSDDGSSSD EEPTPAKKEP IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS
301: EEDSDEEESD DEKPPTKKAK VSSKTSKQES SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI
401: ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR
501: SHFSKCGEVT RVHVPTDRET GASRGFAYID LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS
601: DRGAPRGRFS TRGRGPSKPS VMESSKGTKT VFNDEE

Arabidopsis Description

NUCL2Nucleolin 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEP5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.