Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022338.1-P | Field mustard | nucleus | 73.4 | 79.31 |
| CDX99339 | Canola | nucleus | 74.82 | 36.01 |
| GSMUA_Achr10P... | Banana | nucleus | 32.98 | 31.96 |
| GSMUA_Achr11P... | Banana | nucleus | 33.33 | 31.02 |
| CDY60074 | Canola | nucleus | 41.49 | 26.59 |
| CDX91465 | Canola | nucleus | 17.38 | 26.49 |
| CDY65178 | Canola | nucleus | 41.49 | 24.27 |
| CDX92252 | Canola | nucleus | 50.0 | 23.46 |
| CDX93706 | Canola | nucleus | 41.49 | 23.35 |
| CDX99340 | Canola | nucleus | 50.35 | 22.72 |
| CDX91458 | Canola | nucleus | 18.09 | 22.57 |
| CDX91456 | Canola | mitochondrion | 11.35 | 22.54 |
| CDY59893 | Canola | nucleus | 40.07 | 22.11 |
| CDX91454 | Canola | nucleus | 17.02 | 21.33 |
| CDY54454 | Canola | nucleus | 17.73 | 21.28 |
| CDX91450 | Canola | nucleus | 15.6 | 21.15 |
| CDX77274 | Canola | nucleus | 42.2 | 20.55 |
| CDX90410 | Canola | nucleus | 14.89 | 19.72 |
| TraesCS7B01G183600.1 | Wheat | nucleus | 39.36 | 19.68 |
| CDY20455 | Canola | nucleus | 20.92 | 19.54 |
| HORVU7Hr1G068630.2 | Barley | nucleus | 38.65 | 19.06 |
| CDX91457 | Canola | mitochondrion | 3.55 | 18.87 |
| AT3G18610.1 | Thale cress | nucleus | 42.55 | 18.87 |
| Os08t0192900-01 | Rice | nucleus | 37.94 | 18.71 |
| TraesCS7D01G289200.1 | Wheat | nucleus | 37.59 | 18.53 |
| CDY16474 | Canola | nucleus | 31.21 | 18.18 |
| CDY09605 | Canola | mitochondrion, plastid | 13.12 | 18.05 |
| CDY26273 | Canola | nucleus | 13.48 | 17.59 |
| PGSC0003DMT400003013 | Potato | nucleus | 39.01 | 17.57 |
| TraesCS7A01G286200.1 | Wheat | nucleus | 37.59 | 17.43 |
| Solyc02g014310.2.1 | Tomato | nucleus | 38.65 | 17.27 |
| CDX93704 | Canola | nucleus | 40.07 | 16.57 |
| CDY70171 | Canola | cytosol, nucleus, plastid | 14.18 | 16.33 |
| EES14672 | Sorghum | nucleus | 35.82 | 15.61 |
| CDY09156 | Canola | cytosol | 17.02 | 15.48 |
| EER94106 | Sorghum | nucleus | 36.17 | 15.36 |
| TraesCS2B01G486000.4 | Wheat | nucleus | 39.36 | 15.23 |
| Os04t0620700-01 | Rice | nucleus | 37.94 | 15.13 |
| TraesCS2D01G465200.1 | Wheat | nucleus | 38.65 | 14.91 |
| TraesCS2A01G464300.3 | Wheat | nucleus | 38.3 | 14.75 |
| Zm00001d032748_P001 | Maize | nucleus | 39.36 | 14.45 |
| Zm00001d049399_P001 | Maize | plasma membrane | 35.82 | 14.43 |
| CDX90296 | Canola | nucleus | 15.6 | 13.97 |
| CDY12105 | Canola | plastid | 16.67 | 13.43 |
| CDY36208 | Canola | endoplasmic reticulum, mitochondrion, nucleus, vacuole | 17.73 | 9.69 |
Protein Annotations
| MapMan:17.1.1.1.1 | Gene3D:3.30.70.330 | GO:A0A078DYA6 | EnsemblPlants:CDX92253 | ProteinID:CDX92253 | ProteinID:CDX92253.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00153971001 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0004EF1AA9 | SEG:seg | : | : | : |
Description
BnaA05g21540D
Coordinates
chrLK031871:-:1100281..1102302
Molecular Weight (calculated)
31203.6 Da
IEP (calculated)
10.502
GRAVY (calculated)
-0.873
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKSSKKEAI TKVEAAAALD SKTKPSKKSK RDVEVDLDIP KDAKKQKKEL IQAVQKAPPK KNKKKKKKKN KNKNTNVEMV EGEQKPIAKQ SKTLFAGRLP
101: FHIEKSDLEK FFKEVGEIKD VRLAKGIAHV EFASEEAAQK ALKLNGEPLL GRNILLDFAN AKPAPRPRNL VKTIFVTGFN KSLSEDEMKT ALRAHFSACG
201: EIKRISLPYY QETGDSKGVA YLDFGEDGFN KAMELNGSEV GGRNIVVIEA RPKEKNADRD SGRGNDDSSK KGPGRGNGEM RP
101: FHIEKSDLEK FFKEVGEIKD VRLAKGIAHV EFASEEAAQK ALKLNGEPLL GRNILLDFAN AKPAPRPRNL VKTIFVTGFN KSLSEDEMKT ALRAHFSACG
201: EIKRISLPYY QETGDSKGVA YLDFGEDGFN KAMELNGSEV GGRNIVVIEA RPKEKNADRD SGRGNDDSSK KGPGRGNGEM RP
001: MGKSKSATKV VAEIKATKPL KKGKREPEDD IDTKVSLKKQ KKDVIAAVQK EKAVKKVPKK VESSDDSDSE SEEEEKAKKV PAKKAASSSD ESSDDSSSDD
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE
Arabidopsis Description
NUCL1Nucleolin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.