CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049399_P001	Maize	plasma membrane	74.34	68.71
GSMUA_Achr10P...	Banana	nucleus	24.27	53.95
GSMUA_Achr11P...	Banana	nucleus	23.96	51.16
Os08t0192900-01	Rice	nucleus	44.98	50.87
TraesCS7D01G289200.1	Wheat	nucleus	44.67	50.52
TraesCS7B01G183600.1	Wheat	nucleus	42.97	49.29
HORVU7Hr1G068630.2	Barley	nucleus	42.5	48.08
TraesCS7A01G286200.1	Wheat	nucleus	43.28	46.05
CDY65178	Canola	nucleus	32.3	43.36
OQU82679	Sorghum	nucleus	11.13	43.11
CDY60074	Canola	nucleus	28.75	42.27
Bra032269.1-P	Field mustard	nucleus	28.75	42.27
VIT_05s0020g00100.t01	Wine grape	mitochondrion	8.5	41.35
EER94106	Sorghum	nucleus	40.03	39.01
Bra018764.1-P	Field mustard	nucleus	30.14	39.0
CDY59893	Canola	nucleus	30.29	38.36
CDX93706	Canola	nucleus	29.37	37.92
Bra014162.1-P	Field mustard	nucleus	33.69	37.52
AT1G48920.1	Thale cress	nucleus	32.15	37.34
Bra022338.1-P	Field mustard	nucleus	14.99	37.16
CDX77274	Canola	nucleus	32.77	36.61
Solyc02g014310.2.1	Tomato	nucleus	35.7	36.61
PGSC0003DMT400003013	Potato	nucleus	35.24	36.42
CDX92253	Canola	nucleus	15.61	35.82
KRH29160	Soybean	nucleus	38.49	33.29
VIT_01s0011g02180.t01	Wine grape	nucleus	36.17	32.96
KRH24189	Soybean	nucleus	36.63	31.85
Bra018762.1-P	Field mustard	nucleus	30.91	31.01
CDX92252	Canola	nucleus	28.44	30.62
Bra022337.1-P	Field mustard	nucleus	28.13	30.43
CDX99340	Canola	nucleus	28.75	29.76
CDX93704	Canola	nucleus	31.22	29.62
AT3G18610.1	Thale cress	nucleus	28.28	28.77
CDY16474	Canola	nucleus	21.33	28.51
CDX99339	Canola	nucleus	20.71	22.87
CDY20455	Canola	nucleus	10.2	21.85
KRH40855	Soybean	nucleus	21.64	20.41
KRG89142	Soybean	nucleus	21.17	19.86
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	10.82	13.57

Protein Annotations

MapMan:17.1.1.1.1	Gene3D:3.30.70.330	EntrezGene:8085015	UniProt:C5YID2	EnsemblPlants:EES14672	ProteinID:EES14672
ProteinID:EES14672.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	EnsemblPlantsGene:SORBI_3007G069700	SUPFAM:SSF54928	unigene:Sbi.14955	UniParc:UPI0001A87D5D	RefSeq:XP_002445177.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:7753692..7757902

Molecular Weight (calculated)

68327.8 Da

IEP (calculated)

4.730

GRAVY (calculated)

-1.273

Length

647 amino acids

Sequence
(BLAST)

001: MGKSSKKAAA VAAAPAAVPK GKKREAEDEI EKAVSAKKQK AAPPPKAVVP SKKDAKKAKK QPPPKKVESS SSGSEEDSES EEEVKVPKKA PAAKIAKQES
101: SDDDSSDATS ESDEEPAKKP AVVKNGSKTA KKESSSDEDS SDDESDDVEP AKKAAAKPMG AVAKNGLKKG KQESSSDEDT SDESDDDDKP AAPLKKPSVI
201: DAQKKKEDTS ESDSDDDSDE DVPSKSKAPA AATKKDSSGS ESESDSEVED ASKTQPAKRA AAKIKDESSD DTEDGEPPQK KQKEAPSATK DGSSSEDEDG
301: STEESSDDEP TKAEQKKAPK ASASSGSEDE SSEDDSDEDS DEPANTPKKE APVRASEKQT ATKEPKTPMG SQNEATEEVK TLFMANVPWR AEFEDVKEFF
401: ADAGEVVDVR FPTHEDGHRK GFCYVEFVSA EAAEKAFKEK QSTELQGREV RLDFAKGGRN TQTPRSGNDG SFQKPARGTS NSIFVRGFDK ELSEDEIRSA
501: LQEHFKKCGD ITRVSIPTDY ESGAIKGMAY MDFKDQDSVS KAIELSGTDI GGGYELYVDE AKPKGDGQRG GGRFGDRSGG RFGSGGRRGG GGRFGDRSGG
601: RDGGGRFGGR RGGRDGGGRG RGGGGRGFGR QNAGTPSAGK KTTFGDD

Best Arabidopsis Sequence Match ( AT1G48920.1 )
(BLAST)

001: MGKSKSATKV VAEIKATKPL KKGKREPEDD IDTKVSLKKQ KKDVIAAVQK EKAVKKVPKK VESSDDSDSE SEEEEKAKKV PAKKAASSSD ESSDDSSSDD
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE

Arabidopsis Description

NUCL1Nucleolin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.