Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018764.1-P | Field mustard | nucleus | 95.61 | 95.8 |
| CDY59893 | Canola | nucleus | 73.65 | 72.21 |
| CDY60074 | Canola | nucleus | 57.48 | 65.45 |
| CDY65178 | Canola | nucleus | 61.28 | 63.69 |
| CDX93704 | Canola | nucleus | 77.84 | 57.18 |
| CDX77274 | Canola | nucleus | 62.67 | 54.23 |
| AT1G48920.1 | Thale cress | nucleus | 58.08 | 52.24 |
| CDY16474 | Canola | nucleus | 43.51 | 45.04 |
| GSMUA_Achr10P... | Banana | nucleus | 25.35 | 43.64 |
| GSMUA_Achr11P... | Banana | nucleus | 25.95 | 42.9 |
| CDX92253 | Canola | nucleus | 23.35 | 41.49 |
| TraesCS7B01G183600.1 | Wheat | nucleus | 42.52 | 37.77 |
| Os08t0192900-01 | Rice | nucleus | 42.32 | 37.06 |
| TraesCS7D01G289200.1 | Wheat | nucleus | 41.52 | 36.36 |
| HORVU7Hr1G068630.2 | Barley | nucleus | 41.52 | 36.36 |
| CDX92252 | Canola | nucleus | 42.52 | 35.44 |
| CDX99340 | Canola | nucleus | 43.71 | 35.04 |
| Solyc02g014310.2.1 | Tomato | nucleus | 41.92 | 33.28 |
| PGSC0003DMT400003013 | Potato | nucleus | 41.52 | 33.23 |
| TraesCS7A01G286200.1 | Wheat | nucleus | 38.52 | 31.74 |
| EER94106 | Sorghum | nucleus | 40.12 | 30.27 |
| Os04t0620700-01 | Rice | nucleus | 42.12 | 29.84 |
| CDY20455 | Canola | nucleus | 17.76 | 29.47 |
| EES14672 | Sorghum | nucleus | 37.92 | 29.37 |
| TraesCS2D01G465200.1 | Wheat | nucleus | 41.92 | 28.73 |
| TraesCS2B01G486000.4 | Wheat | nucleus | 41.72 | 28.67 |
| CDX91465 | Canola | nucleus | 10.18 | 27.57 |
| TraesCS2A01G464300.3 | Wheat | nucleus | 40.12 | 27.46 |
| Zm00001d032748_P001 | Maize | nucleus | 41.32 | 26.95 |
| CDX91456 | Canola | mitochondrion | 7.39 | 26.06 |
| Zm00001d049399_P001 | Maize | plasma membrane | 36.13 | 25.86 |
| CDX99339 | Canola | nucleus | 28.34 | 24.23 |
| CDX91450 | Canola | nucleus | 9.78 | 23.56 |
| CDX91454 | Canola | nucleus | 10.38 | 23.11 |
| CDX91458 | Canola | nucleus | 10.38 | 23.01 |
| CDX91457 | Canola | mitochondrion | 2.4 | 22.64 |
| CDY54454 | Canola | nucleus | 9.78 | 20.85 |
| CDY09605 | Canola | mitochondrion, plastid | 8.38 | 20.49 |
| CDY26273 | Canola | nucleus | 8.58 | 19.91 |
| CDX90410 | Canola | nucleus | 8.38 | 19.72 |
| CDY70171 | Canola | cytosol, nucleus, plastid | 9.18 | 18.78 |
| CDY09156 | Canola | cytosol | 10.98 | 17.74 |
| CDY36208 | Canola | endoplasmic reticulum, mitochondrion, nucleus, vacuole | 17.96 | 17.44 |
| CDX90296 | Canola | nucleus | 9.38 | 14.92 |
| CDY12105 | Canola | plastid | 9.58 | 13.71 |
Protein Annotations
| MapMan:17.1.1.1.1 | Gene3D:3.30.70.330 | GO:A0A078DWP0 | EnsemblPlants:CDX93706 | ProteinID:CDX93706 | ProteinID:CDX93706.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00156403001 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:NUCL_RRM1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44047 |
| PANTHER:PTHR44047:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE803A |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g03420D
Coordinates
chrLK031876:+:1461060..1464080
Molecular Weight (calculated)
53484.5 Da
IEP (calculated)
4.767
GRAVY (calculated)
-1.145
Length
501 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKSATKVE AAPAAIKATK PLKKGKREPE DDLETKVNLK KQKKDVVAAV KKEKAEKKVP KKVESSDESD SSDSEEEDKA KKVPAKKAPV KAASSSDDDD
101: SSSDDEPAPK KATNGTVAKK AKDESSSEEE SSDEEEVAVA KKPAAAKPAA KDSSSSEEDS EDESEDEKVK PVAKKAAPVA TKAASSSESS EEDSDEESED
201: EKPAQKAKEG TKKAEKDSSS DDSGSEESES EDEKETPKKK SSDVEMVDAE KQQPKTPSTP ATGGSKTLFV ANLPFQVERS DVEEFFKEAG QVVDVRFATN
301: RDDGSFRGFG HVEFASAGEA QKALEFHGRP LLGRELRLDV AQERGERPAY TPQSGTGNNS RSGGGGGQEV FVKGFDSSLA PNDIKSALTE HFASCGEITR
401: VSVPVDRETG GSRGIAYVEF KEGTEKAFEL NGSDMGGWNL VVDQPRPKEN NSGGGFNSGR SNSFSGGRDN FRGRGRGGRD DNGRGRPSFT SQAKKTVFSD
501: E
101: SSSDDEPAPK KATNGTVAKK AKDESSSEEE SSDEEEVAVA KKPAAAKPAA KDSSSSEEDS EDESEDEKVK PVAKKAAPVA TKAASSSESS EEDSDEESED
201: EKPAQKAKEG TKKAEKDSSS DDSGSEESES EDEKETPKKK SSDVEMVDAE KQQPKTPSTP ATGGSKTLFV ANLPFQVERS DVEEFFKEAG QVVDVRFATN
301: RDDGSFRGFG HVEFASAGEA QKALEFHGRP LLGRELRLDV AQERGERPAY TPQSGTGNNS RSGGGGGQEV FVKGFDSSLA PNDIKSALTE HFASCGEITR
401: VSVPVDRETG GSRGIAYVEF KEGTEKAFEL NGSDMGGWNL VVDQPRPKEN NSGGGFNSGR SNSFSGGRDN FRGRGRGGRD DNGRGRPSFT SQAKKTVFSD
501: E
001: MGKSKSATKV VAEIKATKPL KKGKREPEDD IDTKVSLKKQ KKDVIAAVQK EKAVKKVPKK VESSDDSDSE SEEEEKAKKV PAKKAASSSD ESSDDSSSDD
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE
Arabidopsis Description
NUCL1Nucleolin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.