Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G465200.1 | Wheat | nucleus | 73.53 | 73.32 |
| TraesCS2A01G464300.3 | Wheat | nucleus | 72.84 | 72.54 |
| GSMUA_Achr10P... | Banana | nucleus | 22.91 | 57.39 |
| GSMUA_Achr11P... | Banana | nucleus | 23.32 | 56.11 |
| TraesCS7B01G183600.1 | Wheat | nucleus | 38.82 | 50.18 |
| Os04t0620700-01 | Rice | nucleus | 47.19 | 48.66 |
| EER94106 | Sorghum | nucleus | 43.07 | 47.29 |
| CDY65178 | Canola | nucleus | 30.18 | 45.64 |
| VIT_05s0020g00100.t01 | Wine grape | mitochondrion | 8.23 | 45.11 |
| Zm00001d032748_P001 | Maize | nucleus | 46.91 | 44.53 |
| Bra032269.1-P | Field mustard | nucleus | 26.34 | 43.64 |
| CDY60074 | Canola | nucleus | 26.34 | 43.64 |
| CDX93706 | Canola | nucleus | 28.67 | 41.72 |
| Bra018764.1-P | Field mustard | nucleus | 28.26 | 41.2 |
| AT1G48920.1 | Thale cress | nucleus | 31.28 | 40.93 |
| CDY59893 | Canola | nucleus | 28.12 | 40.12 |
| Bra022338.1-P | Field mustard | nucleus | 14.27 | 39.85 |
| CDX92253 | Canola | nucleus | 15.23 | 39.36 |
| Solyc02g014310.2.1 | Tomato | nucleus | 33.47 | 38.67 |
| PGSC0003DMT400003013 | Potato | nucleus | 33.06 | 38.5 |
| Bra014162.1-P | Field mustard | nucleus | 30.32 | 38.04 |
| CDX77274 | Canola | nucleus | 30.04 | 37.82 |
| VIT_01s0011g02180.t01 | Wine grape | nucleus | 32.92 | 33.8 |
| Bra018762.1-P | Field mustard | nucleus | 29.49 | 33.33 |
| KRH24189 | Soybean | nucleus | 33.88 | 33.2 |
| AT3G18610.1 | Thale cress | nucleus | 28.94 | 33.18 |
| CDX99340 | Canola | nucleus | 28.4 | 33.12 |
| CDX92252 | Canola | nucleus | 27.3 | 33.11 |
| Bra022337.1-P | Field mustard | nucleus | 26.75 | 32.61 |
| KRH29160 | Soybean | nucleus | 33.33 | 32.49 |
| CDX93704 | Canola | nucleus | 30.18 | 32.26 |
| CDY16474 | Canola | nucleus | 20.71 | 31.2 |
| CDY20455 | Canola | nucleus | 10.43 | 25.17 |
| CDX99339 | Canola | nucleus | 18.93 | 23.55 |
| KRH40855 | Soybean | nucleus | 20.03 | 21.28 |
| KRG89142 | Soybean | nucleus | 19.89 | 21.01 |
| CDY36208 | Canola | endoplasmic reticulum, mitochondrion, nucleus, vacuole | 11.52 | 16.28 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G486000.4 | EnsemblPlantsGene:TraesCS2B01G486000 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PFAM:PF00076 |
| PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | MapMan:17.1.1.1.1 | : |
Description
No Description!
Coordinates
chr2B:+:683035392..683040011
Molecular Weight (calculated)
76072.0 Da
IEP (calculated)
4.714
GRAVY (calculated)
-1.150
Length
729 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKSSKKSAV AVAPAAGLVP DGKSGKKGKR NAEDDIEKAA SAKKQKTAPE KAVPVKNDLK VKKVPPKKVE SSSSDEDSSE SEDEVMVQPK KAAPSAKQES
101: SSDSSDESSS DDEPTKKPAT ASKKPAALAS NGSKKVKSDS SSSDSSSDED VMVPPKKAAQ SAKQESSSDG SDESSSDDEP AKKPAAASKK PAAKTEDSDS
201: SSSDEDEDML PAKAPATAKK IEESSESSDS ESSDSEVKPA TEVKNSAVAT AQKKNQDGSD SDSDESSDED MVTKKPVAKK VVESSESSDS DSEEEDTTAK
301: PVQSSKAVAV KKGKESSDSS DSDSEEDTTA KTVSVKKEES SGSSDSDSDS DSDEPAKSTI PAKRPLTTEK KSEHSKDDSD DSSDESDEEE PPQKKPKDSS
401: SGAAKPVSKA AKKESSDDDD SSEESSDSDE EKSKSVSVAK SKQNEPKTPA SSGQATTGSK TLFVGNLSYN VETEQVKQFF GETGEVMDIR FATADDGSFK
501: GFAHVEFATT EAAQKAYELN GGDLAGRPVR LDFARERGAI TPGSGRDNSS FKKPGQSSTA FVRGFDSSLG EDEIRSSLQD HFSSCGGIRR VSIPKDYDTG
601: ASKGIAYIEF DDISSLPKAL ELNRSNIGEG LSLFVDEAKP RADNRDGADS GNRSAGRFNG GGGRRGRFDG GGGRRGGRFD GGSGRRGGGR FGRGDRGGRS
701: DRGRGRGGAP PRLSAGTPSA GKKITFGDD
101: SSDSSDESSS DDEPTKKPAT ASKKPAALAS NGSKKVKSDS SSSDSSSDED VMVPPKKAAQ SAKQESSSDG SDESSSDDEP AKKPAAASKK PAAKTEDSDS
201: SSSDEDEDML PAKAPATAKK IEESSESSDS ESSDSEVKPA TEVKNSAVAT AQKKNQDGSD SDSDESSDED MVTKKPVAKK VVESSESSDS DSEEEDTTAK
301: PVQSSKAVAV KKGKESSDSS DSDSEEDTTA KTVSVKKEES SGSSDSDSDS DSDEPAKSTI PAKRPLTTEK KSEHSKDDSD DSSDESDEEE PPQKKPKDSS
401: SGAAKPVSKA AKKESSDDDD SSEESSDSDE EKSKSVSVAK SKQNEPKTPA SSGQATTGSK TLFVGNLSYN VETEQVKQFF GETGEVMDIR FATADDGSFK
501: GFAHVEFATT EAAQKAYELN GGDLAGRPVR LDFARERGAI TPGSGRDNSS FKKPGQSSTA FVRGFDSSLG EDEIRSSLQD HFSSCGGIRR VSIPKDYDTG
601: ASKGIAYIEF DDISSLPKAL ELNRSNIGEG LSLFVDEAKP RADNRDGADS GNRSAGRFNG GGGRRGRFDG GGGRRGGRFD GGSGRRGGGR FGRGDRGGRS
701: DRGRGRGGAP PRLSAGTPSA GKKITFGDD
001: MGKSKSATKV VAEIKATKPL KKGKREPEDD IDTKVSLKKQ KKDVIAAVQK EKAVKKVPKK VESSDDSDSE SEEEEKAKKV PAKKAASSSD ESSDDSSSDD
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE
101: EPAPKKAVAA TNGTVAKKSK DDSSSSDDDS SDEEVAVTKK PAAAAKNGSV KAKKESSSED DSSSEDEPAK KPAAKIAKPA AKDSSSSDDD SDEDSEDEKP
201: ATKKAAPAAA KAASSSDSSD EDSDEESEDE KPAQKKADTK ASKKSSSDES SESEEDESED EEETPKKKSS DVEMVDAEKS SAKQPKTPST PAAGGSKTLF
301: AANLSFNIER ADVENFFKEA GEVVDVRFST NRDDGSFRGF GHVEFASSEE AQKALEFHGR PLLGREIRLD IAQERGERGE RPAFTPQSGN FRSGGDGGDE
401: KKIFVKGFDA SLSEDDIKNT LREHFSSCGE IKNVSVPIDR DTGNSKGIAY LEFSEGKEKA LELNGSDMGG GFYLVVDEPR PRGDSSGGGG FGRGNGRFGS
501: GGGRGRDGGR GRFGSGGGRG RDGGRGRFGS GGGRGSDRGR GRPSFTPQGK KTTFGDE
Arabidopsis Description
NUCL1Nucleolin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.