CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032748_P001	Maize	nucleus	70.48	60.94
GSMUA_Achr10P...	Banana	nucleus	24.4	55.67
Os04t0620700-01	Rice	nucleus	58.13	54.6
GSMUA_Achr11P...	Banana	nucleus	24.85	54.46
VIT_05s0020g00100.t01	Wine grape	mitochondrion	9.79	48.87
TraesCS2B01G486000.4	Wheat	nucleus	47.29	43.07
CDY65178	Canola	nucleus	30.27	41.7
CDY60074	Canola	nucleus	27.56	41.59
Bra032269.1-P	Field mustard	nucleus	27.56	41.59
TraesCS2D01G465200.1	Wheat	nucleus	45.48	41.31
Bra018764.1-P	Field mustard	nucleus	30.72	40.8
CDY59893	Canola	nucleus	31.33	40.7
AT1G48920.1	Thale cress	nucleus	34.04	40.57
CDX93706	Canola	nucleus	30.27	40.12
EES14672	Sorghum	nucleus	39.01	40.03
TraesCS2A01G464300.3	Wheat	nucleus	43.52	39.48
Bra022338.1-P	Field mustard	nucleus	15.51	39.46
PGSC0003DMT400003013	Potato	nucleus	36.45	38.66
CDX77274	Canola	nucleus	33.43	38.34
Solyc02g014310.2.1	Tomato	nucleus	35.39	37.24
Bra014162.1-P	Field mustard	nucleus	32.53	37.18
CDX92253	Canola	nucleus	15.36	36.17
VIT_01s0011g02180.t01	Wine grape	nucleus	37.8	35.35
OQU82679	Sorghum	nucleus	8.58	34.13
CDX92252	Canola	nucleus	29.67	32.78
Bra022337.1-P	Field mustard	nucleus	29.52	32.78
CDY16474	Canola	nucleus	23.8	32.64
KRH29160	Soybean	nucleus	36.14	32.09
Bra018762.1-P	Field mustard	nucleus	31.02	31.94
CDX99340	Canola	nucleus	29.37	31.2
KRH24189	Soybean	nucleus	34.94	31.18
CDX93704	Canola	nucleus	31.33	30.5
AT3G18610.1	Thale cress	nucleus	29.07	30.35
CDY20455	Canola	nucleus	10.99	24.17
CDX99339	Canola	nucleus	20.33	23.04
KRH40855	Soybean	nucleus	23.04	22.3
KRG89142	Soybean	nucleus	21.84	21.01
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	12.65	16.28

Protein Annotations

MapMan:17.1.1.1.1	Gene3D:3.30.70.330	EntrezGene:8067716	UniProt:C5WZC1	EnsemblPlants:EER94106	ProteinID:EER94106
ProteinID:EER94106.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:NUCL_RRM1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44110
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3001G224200	SUPFAM:SSF54928	unigene:Sbi.9594
UniParc:UPI0001A827FD	RefSeq:XP_002467108.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:21473979..21480077

Molecular Weight (calculated)

70743.4 Da

IEP (calculated)

4.750

GRAVY (calculated)

-1.254

Length

664 amino acids

Sequence
(BLAST)

001: MGKSNKKSSV GAAPAAVAVP EGKSVKKGKR NAEDEIEKAV SAKKQKTAPE KAVPVKKQPP PKKVESSDSE EDSSDSEVKV PVKKQPPPKK VESSSSEDSS
101: DSEVEVPVKK QPPPKKVESS SSDSEEDSSD SEVEVKVQPK KVIQPKKGTQ LAKQESSDDS SSESSDDEPS KKPVAGSKKP AASSSDSDDS SDSDDSSSDE
201: EPAKKPTVLS KKPVTAVSNG SKQVKHDSSS SDSSSDEDEK PAANLKKPPV ASLQKKTQES DSSDSDSDDD ESEDDIPAKA PVVAKKKEAS SDSSDSESED
301: EDNNAKTVQP VKAAAPKKKE ESSGSSESDS ESDSDSDEPE KPTVPGKRPL ATNKKNEESS DESDGSSDES SDESDEEPPQ KKSKETPVDT TQKSAHNEPK
401: TPAKSQSQAT GSKTIFVGNL AYSIEREQVK EFFEEAGEVV DIRLSTFDDG SFKGYGHVEF ATAEAAQKAL EFGGRDLMGR SLRIDLAVER GAYTPNSGKD
501: NGSFRKSAQR SGNTVFIKGF DTSVGEDQIR SALEEHFRSC GDITRISIPK DYDTGASKGM AYMDFKDPDS LNKAYEMNGT YLGDYSLYVD EAKPRPDNNR
601: DGGFSGGRGS RGRSDRGRGD RGRGRGFGGR GGRGDRGRGG RGTPFRQTAG TPSAGKKTTF GDDD

Best Arabidopsis Sequence Match ( AT3G18610.1 )
(BLAST)

001: MGKSSKKSVT EVETPASMTK PLKKGKRDAE EDLDMQVTKK QKKELIDVVQ KEKAEKTVPK KVESSSSDAS DSDEEEKTKE TPSKLKDESS SEEEDDSSSD
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPVKKQP AVLEKAKIES SSSDDDSSSD EETVPMKKQT
201: AVLEKAKAES SSSDDGSSSD EEPTPAKKEP IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS
301: EEDSDEEESD DEKPPTKKAK VSSKTSKQES SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI
401: ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR
501: SHFSKCGEVT RVHVPTDRET GASRGFAYID LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS
601: DRGAPRGRFS TRGRGPSKPS VMESSKGTKT VFNDEE

Arabidopsis Description

NUCL2Nucleolin 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEP5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.