Factsheet for Zm00001d032748_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94106	Sorghum	nucleus	60.94	70.48
GSMUA_Achr10P...	Banana	nucleus	22.01	58.08
GSMUA_Achr11P...	Banana	nucleus	22.27	56.44
Os04t0620700-01	Rice	nucleus	50.26	54.6
VIT_05s0020g00100.t01	Wine grape	mitochondrion	8.2	47.37
TraesCS2D01G465200.1	Wheat	nucleus	45.05	47.33
TraesCS2B01G486000.4	Wheat	nucleus	44.53	46.91
TraesCS2A01G464300.3	Wheat	nucleus	43.62	45.77
CDY60074	Canola	nucleus	24.87	43.41
Bra032269.1-P	Field mustard	nucleus	24.87	43.41
CDY65178	Canola	nucleus	27.08	43.15
Bra022338.1-P	Field mustard	nucleus	14.32	42.15
Bra018764.1-P	Field mustard	nucleus	27.21	41.8
AT1G48920.1	Thale cress	nucleus	30.08	41.47
CDX93706	Canola	nucleus	26.95	41.32
CDY59893	Canola	nucleus	27.34	41.1
Bra014162.1-P	Field mustard	nucleus	29.95	39.59
CDX77274	Canola	nucleus	29.82	39.55
CDX92253	Canola	nucleus	14.45	39.36
Zm00001d049399_P001	Maize	plasma membrane	35.29	38.71
VIT_01s0011g02180.t01	Wine grape	nucleus	35.42	38.31
PGSC0003DMT400003013	Potato	nucleus	30.99	38.02
Solyc02g014310.2.1	Tomato	nucleus	31.12	37.88
Bra022337.1-P	Field mustard	nucleus	26.69	34.28
CDX92252	Canola	nucleus	26.82	34.28
KRH29160	Soybean	nucleus	33.33	34.22
Bra018762.1-P	Field mustard	nucleus	27.99	33.33
KRH24189	Soybean	nucleus	32.16	33.2
CDX99340	Canola	nucleus	26.82	32.96
CDX93704	Canola	nucleus	28.91	32.55
CDY16474	Canola	nucleus	20.44	32.44
AT3G18610.1	Thale cress	nucleus	26.82	32.39
Zm00001d018553_P001	Maize	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	10.16	25.91
CDY20455	Canola	nucleus	9.64	24.5
CDX99339	Canola	nucleus	18.36	24.06
KRH40855	Soybean	nucleus	20.44	22.89
KRG89142	Soybean	nucleus	19.27	21.45
CDY36208	Canola	endoplasmic reticulum, mitochondrion, nucleus, vacuole	10.55	15.7

Protein Annotations

EnsemblPlants:Zm00001d032748_P001	EnsemblPlants:Zm00001d032748_T001	EnsemblPlantsGene:Zm00001d032748	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:NUCL_RRM1	InterPro:Nucleotide-bd_a/b_plait_sf
InterPro:RBD_domain_sf	InterPro:RRM_dom	PFAM:PF00076	PFscan:PS50102	ProteinID:ONM05986.1	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000843AF31	UniProt:A0A1D6KTS3	MapMan:17.1.1.1.1	:

Description

Nucleolin 2

Coordinates

chr1:-:237169276..237182149

Molecular Weight (calculated)

81285.2 Da

IEP (calculated)

4.637

GRAVY (calculated)

-1.144

Length

768 amino acids

Sequence
(BLAST)

001: MGKSSKKSSV KAAPAAVSVP EGKSAKKGKR NAEDEIEKAV SAKKQKTVPE KAVPVKKQPP PKKVESSSSE EDSSDSEVEV KVQPKKVIQP KKSTQPAKQE
101: SSDDSSSESS SDDEPSKKPV AGSKKPPASS SSSDDSSDSD DSSSDEEPAK KPTVLSKKPT VLSKKPTVLS KKPVTAVSNG SKQVKPDSSS SDSSSDEDEK
201: PAASLKKPVV ASVQKKTQES DSSDSDSDED ESEDDIPAKA QVVAKKKEES SSSSDSDSDS ESEDEKPAAN LKKPPVPSVQ KKTQESDSSD SDSDEDESDD
301: IPAKAQVVAK KKEESGSSSD SDSEFESDDE DSNAKTVQPA KAAAIKKKED SSESSETDSQ SDSEDSEPEK PTVPAKRPLA TNKKNEQSSE KSDDSSDESS
401: DESDEEPPQK KTKNSAPSGA AKAATNVSKK KSSSDEDDES SEESSDDEDT EQVETKSGYN SFFDVQETSV VTTQKPAHNE PKTPAKSQSQ ATGSKTIFVG
501: NLAYSIEREQ VKEFFEEAGE VVDVRLATFD DGSFKGFGHV EFATVEAAQK ALEFVGHDLM GRPLRIDMAT ERGAYTPSSG LSSILFIGAV VIQKDNGSFK
601: KFAPRSGNTV FIKGFDTSGG EDQIRTALEE HFGSCGDITR ISIPKDYDTG VSKGMAYMDF KDPDSLNKAY ELNGTDLGGY SLYVDEAKPR PDNSGGFSGD
701: RGGGRGRSGG FSGGRGGRSD RGRGGSRGRG FGGRGGRGDR GRGGRGTPFR QTAGTASTGK KTTFGDDD

Best Arabidopsis Sequence Match ( AT3G18610.1 )
(BLAST)

001: MGKSSKKSVT EVETPASMTK PLKKGKRDAE EDLDMQVTKK QKKELIDVVQ KEKAEKTVPK KVESSSSDAS DSDEEEKTKE TPSKLKDESS SEEEDDSSSD
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPVKKQP AVLEKAKIES SSSDDDSSSD EETVPMKKQT
201: AVLEKAKAES SSSDDGSSSD EEPTPAKKEP IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS
301: EEDSDEEESD DEKPPTKKAK VSSKTSKQES SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI
401: ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR
501: SHFSKCGEVT RVHVPTDRET GASRGFAYID LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS
601: DRGAPRGRFS TRGRGPSKPS VMESSKGTKT VFNDEE

Arabidopsis Description

NUCL2Nucleolin 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEP5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.