Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400003013 | Potato | nucleus | 75.44 | 76.04 |
| GSMUA_Achr10P... | Banana | nucleus | 25.2 | 54.64 |
| GSMUA_Achr11P... | Banana | nucleus | 24.25 | 50.49 |
| VIT_05s0020g00100.t01 | Wine grape | mitochondrion | 10.3 | 48.87 |
| CDY60074 | Canola | nucleus | 32.33 | 46.36 |
| Bra032269.1-P | Field mustard | nucleus | 32.33 | 46.36 |
| Bra018764.1-P | Field mustard | nucleus | 34.23 | 43.2 |
| CDY65178 | Canola | nucleus | 32.81 | 42.95 |
| AT1G48920.1 | Thale cress | nucleus | 37.4 | 42.37 |
| CDX93706 | Canola | nucleus | 33.28 | 41.92 |
| VIT_01s0011g02180.t01 | Wine grape | nucleus | 46.91 | 41.69 |
| Bra022338.1-P | Field mustard | nucleus | 16.96 | 41.0 |
| CDY59893 | Canola | nucleus | 32.49 | 40.12 |
| CDX77274 | Canola | nucleus | 36.45 | 39.72 |
| Os08t0192900-01 | Rice | nucleus | 35.82 | 39.51 |
| TraesCS7B01G183600.1 | Wheat | nucleus | 35.02 | 39.18 |
| TraesCS7D01G289200.1 | Wheat | nucleus | 35.34 | 38.99 |
| Bra014162.1-P | Field mustard | nucleus | 35.82 | 38.9 |
| CDX92253 | Canola | nucleus | 17.27 | 38.65 |
| HORVU7Hr1G068630.2 | Barley | nucleus | 34.07 | 37.59 |
| EES14672 | Sorghum | nucleus | 36.61 | 35.7 |
| KRH29160 | Soybean | nucleus | 42.16 | 35.56 |
| EER94106 | Sorghum | nucleus | 37.24 | 35.39 |
| KRH24189 | Soybean | nucleus | 41.68 | 35.35 |
| Os04t0620700-01 | Rice | nucleus | 39.46 | 35.22 |
| TraesCS7A01G286200.1 | Wheat | nucleus | 33.28 | 34.54 |
| Bra022337.1-P | Field mustard | nucleus | 32.65 | 34.45 |
| Zm00001d049399_P001 | Maize | plasma membrane | 38.03 | 34.29 |
| CDX92252 | Canola | nucleus | 32.49 | 34.11 |
| Bra018762.1-P | Field mustard | nucleus | 34.39 | 33.64 |
| TraesCS2B01G486000.4 | Wheat | nucleus | 38.67 | 33.47 |
| TraesCS2A01G464300.3 | Wheat | nucleus | 38.51 | 33.2 |
| CDX99340 | Canola | nucleus | 32.81 | 33.12 |
| TraesCS2D01G465200.1 | Wheat | nucleus | 38.03 | 32.83 |
| AT3G18610.1 | Thale cress | nucleus | 32.65 | 32.39 |
| CDY16474 | Canola | nucleus | 24.72 | 32.23 |
| CDX93704 | Canola | nucleus | 34.07 | 31.52 |
| Zm00001d032748_P001 | Maize | nucleus | 37.88 | 31.12 |
| CDY20455 | Canola | nucleus | 12.36 | 25.83 |
| CDX99339 | Canola | nucleus | 20.92 | 22.53 |
| KRH40855 | Soybean | nucleus | 22.82 | 20.99 |
| KRG89142 | Soybean | nucleus | 22.19 | 20.29 |
| CDY36208 | Canola | endoplasmic reticulum, mitochondrion, nucleus, vacuole | 12.84 | 15.7 |
Protein Annotations
| EnsemblPlants:Solyc02g014310.2.1 | EnsemblPlantsGene:Solyc02g014310.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:NUCL_RRM1 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | ncoils:Coil | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0002768264 | UniProt:K4B4N0 | MapMan:17.1.1.1.1 | : | : |
Description
No Description!
Coordinates
chr2:-:15735648..15740449
Molecular Weight (calculated)
65756.2 Da
IEP (calculated)
5.028
GRAVY (calculated)
-1.087
Length
631 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKSIKKSAT KADAAVVAPT KSMKKGKREA EDEIAKLVSA KKQKKDVAVA QAVEKKKSDL KTQKKKKPVS SSSDDSSSES ESEDDKPLVP PKKVAPAKKG
101: KVASSSDDSD SSDEDEAPAK KVVVASTKNG VAAKKKDESS DDSDDSSSEE DVPAPKKPPT NGAKKDKSSD DSDDSSSEDD AVVKKAPAVV KKAPAAASKK
201: QESSSDSSDD SSSDDDDEPP SKVVAQPKKA PQAVKKTGDS SDDSDDSESD SDSDKGKAAT VAKKTAAVSK KVASSDDDSE DDSSEESDEE PQKKKSKPST
301: TPAVSKAPEK SSSEESSDSD DSSEDEEDDK PSKTPKKGAD VEMVDAPSAK AQQTPITPKA QTPGGSKTLF VGNLSYSVEQ ADVENFFKDA GEVQEVRFAT
401: HEDGSFKGFG HVEFVTAEAA HKALELNGHD LLGRDVRLDL ARERGEYTPR SGNENSFQRP ARSEGTTIFV RGFDKNEAED QIRSSLEEHF ASCGKIFKTR
501: IPTDPEGYIK GMAYIEFANG DADALNKALE LDGSEVGGFS LNVQEAKPRG DSAGGGGRGF GGRSGGRGGG RDSGGRFGGR GGGGRFGGGG RFGGGGRGGG
601: GGRFGGGGRG RGNANKPSFT PSGKKTTFSD E
101: KVASSSDDSD SSDEDEAPAK KVVVASTKNG VAAKKKDESS DDSDDSSSEE DVPAPKKPPT NGAKKDKSSD DSDDSSSEDD AVVKKAPAVV KKAPAAASKK
201: QESSSDSSDD SSSDDDDEPP SKVVAQPKKA PQAVKKTGDS SDDSDDSESD SDSDKGKAAT VAKKTAAVSK KVASSDDDSE DDSSEESDEE PQKKKSKPST
301: TPAVSKAPEK SSSEESSDSD DSSEDEEDDK PSKTPKKGAD VEMVDAPSAK AQQTPITPKA QTPGGSKTLF VGNLSYSVEQ ADVENFFKDA GEVQEVRFAT
401: HEDGSFKGFG HVEFVTAEAA HKALELNGHD LLGRDVRLDL ARERGEYTPR SGNENSFQRP ARSEGTTIFV RGFDKNEAED QIRSSLEEHF ASCGKIFKTR
501: IPTDPEGYIK GMAYIEFANG DADALNKALE LDGSEVGGFS LNVQEAKPRG DSAGGGGRGF GGRSGGRGGG RDSGGRFGGR GGGGRFGGGG RFGGGGRGGG
601: GGRFGGGGRG RGNANKPSFT PSGKKTTFSD E
001: MGKSSKKSVT EVETPASMTK PLKKGKRDAE EDLDMQVTKK QKKELIDVVQ KEKAEKTVPK KVESSSSDAS DSDEEEKTKE TPSKLKDESS SEEEDDSSSD
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPMKKQT AVLEKAKAES SSSDDGSSSD EEPTPAKKEP
201: IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS EEDSDEEESD DEKPPTKKAK VSSKTSKQES
301: SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE
401: FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR SHFSKCGEVT RVHVPTDRET GASRGFAYID
501: LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS DRGAPRGRFS TRGRGPSKPS VMESSKGTKT
601: VFNDEE
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPMKKQT AVLEKAKAES SSSDDGSSSD EEPTPAKKEP
201: IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS EEDSDEEESD DEKPPTKKAK VSSKTSKQES
301: SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE
401: FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR SHFSKCGEVT RVHVPTDRET GASRGFAYID
501: LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS DRGAPRGRFS TRGRGPSKPS VMESSKGTKT
601: VFNDEE
Arabidopsis Description
NUCL2Nucleolin 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEP5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.