Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032269.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY65178 | Canola | nucleus | 84.32 | 76.97 |
| CDY59893 | Canola | nucleus | 68.86 | 59.3 |
| CDX93706 | Canola | nucleus | 65.45 | 57.48 |
| CDX77274 | Canola | nucleus | 66.36 | 50.43 |
| GSMUA_Achr10P... | Banana | nucleus | 32.73 | 49.48 |
| GSMUA_Achr11P... | Banana | nucleus | 33.86 | 49.17 |
| AT1G48920.1 | Thale cress | nucleus | 61.14 | 48.29 |
| CDX93704 | Canola | nucleus | 65.45 | 42.23 |
| CDX92253 | Canola | nucleus | 26.59 | 41.49 |
| CDY16474 | Canola | nucleus | 41.82 | 38.02 |
| TraesCS7B01G183600.1 | Wheat | nucleus | 45.23 | 35.28 |
| Os08t0192900-01 | Rice | nucleus | 45.0 | 34.62 |
| TraesCS7D01G289200.1 | Wheat | nucleus | 44.32 | 34.09 |
| HORVU7Hr1G068630.2 | Barley | nucleus | 43.18 | 33.22 |
| Solyc02g014310.2.1 | Tomato | nucleus | 46.36 | 32.33 |
| PGSC0003DMT400003013 | Potato | nucleus | 45.0 | 31.63 |
| TraesCS7A01G286200.1 | Wheat | nucleus | 42.95 | 31.09 |
| CDX92252 | Canola | nucleus | 42.27 | 30.95 |
| CDX99340 | Canola | nucleus | 43.64 | 30.72 |
| CDX91465 | Canola | nucleus | 12.27 | 29.19 |
| EES14672 | Sorghum | nucleus | 42.27 | 28.75 |
| CDX91456 | Canola | mitochondrion | 9.09 | 28.17 |
| Os04t0620700-01 | Rice | nucleus | 45.0 | 28.01 |
| EER94106 | Sorghum | nucleus | 41.59 | 27.56 |
| TraesCS2D01G465200.1 | Wheat | nucleus | 45.45 | 27.36 |
| TraesCS2B01G486000.4 | Wheat | nucleus | 43.64 | 26.34 |
| TraesCS2A01G464300.3 | Wheat | nucleus | 43.64 | 26.23 |
| CDY20455 | Canola | nucleus | 17.73 | 25.83 |
| CDX91450 | Canola | nucleus | 12.05 | 25.48 |
| Zm00001d049399_P001 | Maize | plasma membrane | 40.23 | 25.29 |
| CDX91458 | Canola | nucleus | 12.95 | 25.22 |
| Zm00001d032748_P001 | Maize | nucleus | 43.41 | 24.87 |
| CDX91457 | Canola | mitochondrion | 2.95 | 24.53 |
| CDX91454 | Canola | nucleus | 12.27 | 24.0 |
| CDX99339 | Canola | nucleus | 31.14 | 23.38 |
| CDY54454 | Canola | nucleus | 12.27 | 22.98 |
| CDY09605 | Canola | mitochondrion, plastid | 10.23 | 21.95 |
| CDY26273 | Canola | nucleus | 10.23 | 20.83 |
| CDX90410 | Canola | nucleus | 9.77 | 20.19 |
| CDY70171 | Canola | cytosol, nucleus, plastid | 10.68 | 19.18 |
| CDY09156 | Canola | cytosol | 12.5 | 17.74 |
| CDX90296 | Canola | nucleus | 12.5 | 17.46 |
| CDY36208 | Canola | endoplasmic reticulum, mitochondrion, nucleus, vacuole | 18.64 | 15.89 |
| CDY12105 | Canola | plastid | 12.27 | 15.43 |
Protein Annotations
| MapMan:17.1.1.1.1 | Gene3D:3.30.70.330 | GO:A0A078J8H7 | UniProt:A0A078J8H7 | EnsemblPlants:CDY60074 | ProteinID:CDY60074 |
| ProteinID:CDY60074.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00028133001 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:NUCL_RRM1 | InterPro:NUCL_RRM2 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44047 | PANTHER:PTHR44047:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002547C9F | SEG:seg | : | : |
Description
BnaA05g36400DBnaA05g36400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J8H7]
Coordinates
chrLK033837:+:14108..16994
Molecular Weight (calculated)
46580.8 Da
IEP (calculated)
4.767
GRAVY (calculated)
-1.038
Length
440 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKSATKVD AAPAAIKATK PLKKGKRDPE DDLDTKVNLK KQKKDVIAAV QKEKAEKKVP KKVENSDSSD IEEEESSDEE EVAAVAKNGS VKAKAESSSE
101: EEDSSDESDD ESEKPAAKKA APATTKADSS EEDSDEESED EKPAAKKDSS SDDSDSDESE SEDEKETPKK KNSDVEMVNA EQKQPKTPST PATGGSKTLF
201: VANLSFNVER SDVENFFKDV GEVVDVRFAM SKDDGSFRGF GHVEFATAEQ AQKALELHGT SMLGRDIRLD VAQERGERPA YTPQSGAGGN FRSGGGGGQS
301: VFVKGFDSSL PEEDIKSALS AHFASCGEIT RVSVPCDRET GASKGIAYLD FKDGTDKAFE LNGSDMGGWS IVVDQPREKS SGGFGGGGRS GGGRFGSGRG
401: GGRGRDGGRG RGRGGGRGRD GGRGFNKPSF SGKKTTFNDY
101: EEDSSDESDD ESEKPAAKKA APATTKADSS EEDSDEESED EKPAAKKDSS SDDSDSDESE SEDEKETPKK KNSDVEMVNA EQKQPKTPST PATGGSKTLF
201: VANLSFNVER SDVENFFKDV GEVVDVRFAM SKDDGSFRGF GHVEFATAEQ AQKALELHGT SMLGRDIRLD VAQERGERPA YTPQSGAGGN FRSGGGGGQS
301: VFVKGFDSSL PEEDIKSALS AHFASCGEIT RVSVPCDRET GASKGIAYLD FKDGTDKAFE LNGSDMGGWS IVVDQPREKS SGGFGGGGRS GGGRFGSGRG
401: GGRGRDGGRG RGRGGGRGRD GGRGFNKPSF SGKKTTFNDY
001: MGKSSKKSVT EVETPASMTK PLKKGKRDAE EDLDMQVTKK QKKELIDVVQ KEKAEKTVPK KVESSSSDAS DSDEEEKTKE TPSKLKDESS SEEEDDSSSD
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPVKKQP AVLEKAKIES SSSDDDSSSD EETVPMKKQT
201: AVLEKAKAES SSSDDGSSSD EEPTPAKKEP IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS
301: EEDSDEEESD DEKPPTKKAK VSSKTSKQES SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI
401: ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR
501: SHFSKCGEVT RVHVPTDRET GASRGFAYID LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS
601: DRGAPRGRFS TRGRGPSKPS VMESSKGTKT VFNDEE
101: EEIAPAKKRP EPIKKAKVES SSSDDDSTSD EETAPVKKQP AVLEKAKVES SSSDDDSSSD EETVPVKKQP AVLEKAKIES SSSDDDSSSD EETVPMKKQT
201: AVLEKAKAES SSSDDGSSSD EEPTPAKKEP IVVKKDSSDE SSSDEETPVV KKKPTTVVKD AKAESSSSEE ESSSDDEPTP AKKPTVVKNA KPAAKDSSSS
301: EEDSDEEESD DEKPPTKKAK VSSKTSKQES SSDESSDESD KEESKDEKVT PKKKDSDVEM VDAEQKSNAK QPKTPTNQTQ GGSKTLFAGN LSYQIARSDI
401: ENFFKEAGEV VDVRLSSFDD GSFKGYGHIE FASPEEAQKA LEMNGKLLLG RDVRLDLANE RGTPRNSNPG RKGEGSQSRT IYVRGFSSSL GEDEIKKELR
501: SHFSKCGEVT RVHVPTDRET GASRGFAYID LTSGFDEALQ LSGSEIGGGN IHVEESRPRD SDEGRSSNRA PARGAPRGRH SDRAPRGGRF SDRAPRGRHS
601: DRGAPRGRFS TRGRGPSKPS VMESSKGTKT VFNDEE
Arabidopsis Description
NUCL2Nucleolin 2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PEP5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.